Locus 577

Sequence ID 2R_DroMel_CAF1
Location 2,964,633 – 2,964,726
Length 93
Max. P 0.938647
window1054

overview

Window 4

Location 2,964,633 – 2,964,726
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 94.98
Mean single sequence MFE -10.75
Consensus MFE -10.35
Energy contribution -10.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.96
SVM decision value 1.27
SVM RNA-class probability 0.938647
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2964633 93 - 20766785
CUAGCAAUAUAUUAUAUAUCCCUAUACGAAUCUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAUAUACAAACUAUAACUGGGUUAC
.(((..(((((...)))))..)))......................((((((((.............................)))))))).. ( -11.15)
>DroSec_CAF1 7758 93 - 1
CAAACAAUAUAUUAUAUAUCCCUAUAAGAAACUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAAAUACAAACGAUAACUGGGUUAC
........................((((..((.....))...))))((((((((.............................)))))))).. ( -10.55)
>DroSim_CAF1 6509 93 - 1
CAAACAAUAUAUUAUAUAUACCUAUAAGAAACUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAAAUACAAACGAUAACUGGGUUAC
........................((((..((.....))...))))((((((((.............................)))))))).. ( -10.55)
>consensus
CAAACAAUAUAUUAUAUAUCCCUAUAAGAAACUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAAAUACAAACGAUAACUGGGUUAC
..............................................((((((((.............................)))))))).. (-10.35 = -10.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:01 2006