Locus 5767

Sequence ID 2R_DroMel_CAF1
Location 18,281,732 – 18,281,834
Length 102
Max. P 0.642305
window9239

overview

Window 9

Location 18,281,732 – 18,281,834
Length 102
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.31
Mean single sequence MFE -21.84
Consensus MFE -13.69
Energy contribution -14.42
Covariance contribution 0.73
Combinations/Pair 1.21
Mean z-score -1.54
Structure conservation index 0.63
SVM decision value 0.23
SVM RNA-class probability 0.642305
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18281732 102 - 20766785
AUCCUUCC-UCC-CCUGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUCCUGUUGGCCAAGCCAAGCCAAGAUUUAU
........-...-...........((((.......(......).......))))(((((.((((...(((.....)))..((((...))))))))))))).... ( -21.04)
>DroSec_CAF1 79491 95 - 1
AUCCUUCC-UCCCCCGGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCAUCUUUGGCUGUAAGGAAUUUCCUGCUGGCCAAGC--------GAUUUAU
........-.......(((....((((((((.....(((((((.......(((((....))))).))))))).....))).))))))))--------....... ( -21.40)
>DroSim_CAF1 80568 94 - 1
AUCCCUCC-UCC-CCGGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUCCUGCUGGCCAAGC--------GAUUUAU
........-...-.(((((.....(((...............))).....)))))(((((((((...(((.....)))...))))))).--------))..... ( -21.66)
>DroEre_CAF1 83037 91 - 1
AUCCUUUG-----GCUGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUGCUGCCGGCCAAGC--------GAUUUAU
(((.((((-----(((........(((.((((.(((((............(((((....)))))...))))).)))).)))))))))).--------))).... ( -25.66)
>DroYak_CAF1 80522 91 - 1
AUCCUUUG-----GCUGCUCCCCAGGCUGCAACUUCUUCUUUGUCUUCUAAGCCAUCUUUGGCUGUAAGGAAUUUCCUGCCGGCCAUGC--------GAUUUAU
......((-----((((((.....))).((((........))))......)))))((..((((((..(((.....)))..))))))...--------))..... ( -22.10)
>DroAna_CAF1 77464 95 - 1
AUCCUUCUCUGG-UCUGCUACC---GCUGCAAGUC---CUUUGUCUUUUAAGCCGUCUUUGGCAGCAAGAAAUCUUCGAGCAGCCAUCACUGAACAAAAUUU--
.........(((-.(((((...---(((((.((.(---(((........)))..).))...)))))(((....)))..))))))))................-- ( -19.20)
>consensus
AUCCUUCC_UCC_CCUGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUCCUGCCGGCCAAGC________GAUUUAU
........................(((((((.....(((((((.......(((((....))))).))))))).....))).))))................... (-13.69 = -14.42 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:54 2006