Locus 5764

Sequence ID 2R_DroMel_CAF1
Location 18,268,426 – 18,268,522
Length 96
Max. P 0.688992
window9234

overview

Window 4

Location 18,268,426 – 18,268,522
Length 96
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -12.41
Consensus MFE -11.98
Energy contribution -11.60
Covariance contribution -0.37
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.96
SVM decision value 0.32
SVM RNA-class probability 0.688992
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18268426 96 - 20766785
GAUAACGUUACUGCAGUUGAGUUGUUGCUCCAGACCAACACUUUCAACACCAUC---ACCACCAACCAGCAAACUACCUGUAGCCACCAAAAACCACCA
......((..(((((((((((.(((((........)))))..))))))......---..........((....))...)))))..))............ ( -12.70)
>DroSec_CAF1 65298 90 - 1
GAUAACGUUACUGCAGUUGAGUUGUUGCUCAAGACCAACUCUUUCAACACC---------ACCAACCAGCAAACCACCUGUAGCCACCAAAAACCACCA
......((..((((((.((..((((((...((((.....))))........---------......))))))..)).))))))..))............ ( -13.03)
>DroEre_CAF1 67942 99 - 1
GAUAACGUUACUGCAGUUGAGUUGUUGCUCAAGACCAACACUUUCAACACCACCACCACCACCAACCAGCAAACCACCUGUAGCCACCAAAAACCACCA
......((..((((((.((..((((((.......................................))))))..)).))))))..))............ ( -12.53)
>DroAna_CAF1 65427 97 - 1
GAUAACGUUAUUGCAGUUGAGUUGUUGUUCAAGACCAACACUUUCGACACCACCACCACCACCAACCAGCAAACCACCUGUAGCCACCAAA--CCACCA
............((.((((((.(((((........)))))..))))))..................(((........)))..)).......--...... ( -11.40)
>consensus
GAUAACGUUACUGCAGUUGAGUUGUUGCUCAAGACCAACACUUUCAACACCACC___ACCACCAACCAGCAAACCACCUGUAGCCACCAAAAACCACCA
......((..((((((.((..((((((.......................................))))))..)).))))))..))............ (-11.98 = -11.60 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:50 2006