Locus 5754

Sequence ID 2R_DroMel_CAF1
Location 18,213,518 – 18,213,634
Length 116
Max. P 0.640496
window9218

overview

Window 8

Location 18,213,518 – 18,213,634
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -39.56
Consensus MFE -29.56
Energy contribution -30.15
Covariance contribution 0.59
Combinations/Pair 1.29
Mean z-score -1.44
Structure conservation index 0.75
SVM decision value 0.22
SVM RNA-class probability 0.640496
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18213518 116 - 20766785
CGCCAGUUCUUCCACAACUGCCCGGCGGAUCGCUGGUCGAAGACCAAGGAGUGCGAGGAUACCCUGGCCUUCAGCAAGAAGUGCCAGGACUCGCUGGCUACUUUGUGAAUAAUGAG
.((((((((((((((..((((...)))).((..(((((...)))))..))))).)))))...((((((((((.....)))).))))))....)))))).................. ( -44.00)
>DroVir_CAF1 38699 116 - 1
CGACAAUUCUUCCACAAUUGUCCCGCCGAUCGUUGGUCCAAGUCCGCGGAGUGCGAGAACGUAUUGGCCUUUAGUCAGAACUGUCGCGAUUCCUUGGCCACUUUGUAAAGAGUUGA
...((((((((..(((((((..(((.(....).)))..)))(.(((.(((((((((.(..((.(((((.....))))).))).)))).))))).))).)...)))).)))))))). ( -33.30)
>DroSec_CAF1 11390 116 - 1
CGCCAGUUCUUCCACAACUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACCCUGGCCUUCAGCAAGAAGUGCCAGGACUCCCUUGCUACCUUGUAAAUAAUGAG
.((((((...(((.(.........).)))..)))))).......(((((...((((((....((((((((((.....)))).))))))....))))))..)))))........... ( -42.40)
>DroEre_CAF1 11275 110 - 1
CGCCAGUUCUUCCACAACUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACCCUGGCCUUCAGCAAGAAGUGCCAGAACUCGCUGGCCACUUUGUGAAC------
.((((((((((((((......((((((...))))))(((........)))))).)))))....(((((((((.....)))).))))).....))))))............------ ( -41.40)
>DroYak_CAF1 11517 116 - 1
CGCCAGUUCUUCCACAAUUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACGCUGGCCUUCAGCAGGAAGUGCCAGGACUCGCUGGCUACAUUGUAAAUAAUGAU
.((((((((((((((......((((((...))))))(((........)))))).)))))....(((((((((.....)))).))))).....))))))..(((((....))))).. ( -43.20)
>DroAna_CAF1 11897 116 - 1
CGCCAGUUCUUCCACAAUUGUCCUGCUGAUCGUUGGUCCAAGACUAAGGAGUGUGAGGACACUUUGGCCUUUAGCAAAACAUGCCAGGACGCAUUGGCCUCAUUGUAAUUCCUGAA
.((((((.(.(((.....((((((((...((.((((((...)))))).))..)).))))))...((((..............))))))).).)))))).................. ( -33.04)
>consensus
CGCCAGUUCUUCCACAACUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACCCUGGCCUUCAGCAAGAAGUGCCAGGACUCGCUGGCCACUUUGUAAAUAAUGAA
.((((((((((((((......(((((.....)))))(((........)))))).)))))....(((((((((.....)))).))))).....)))))).................. (-29.56 = -30.15 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:34 2006