Locus 5745

Sequence ID 2R_DroMel_CAF1
Location 18,197,394 – 18,197,497
Length 103
Max. P 0.831589
window9200

overview

Window 0

Location 18,197,394 – 18,197,497
Length 103
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.75
Mean single sequence MFE -28.52
Consensus MFE -19.19
Energy contribution -19.13
Covariance contribution -0.05
Combinations/Pair 1.25
Mean z-score -1.64
Structure conservation index 0.67
SVM decision value 0.72
SVM RNA-class probability 0.831589
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18197394 103 - 20766785
AACGGAGUUUCUGCUUUUUUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG-AUUGUGUUG------UUGCUGCU---CUUGC-GUUCGCAGGUAGCGAGCAGCGAUCGCA
...(((((....))))).......((.(((...(((((..((((((...)))))-)..)))))(------((((((((---(((((-....))))).))).))))))))).)). ( -35.60)
>DroPse_CAF1 22377 83 - 1
AACA----------UUU-UUUGGAGUUAUCGUUAAUAUUUUCUUGGAAACCGGG-AUUGUAUUG------UU------------GC-GCUCGCAGGUAGCGAACAGCGAUCGCA
....----------...-......((.(((((((((((..((((((...)))))-)..)))))(------((------------.(-((((....).))))))))))))).)). ( -21.80)
>DroEre_CAF1 23198 102 - 1
AACGUAGUUUCUGCUUU-UUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG-CUUGUGUUG------UUGCUGCU---CUUGC-GUUCGCAGGUAGCGAGCAGCGAUCGCA
((((....((((.....-...))))....))))........(((((...)))))-..(((((((------((((((((---(((((-....))))).))).)))))))).)))) ( -33.70)
>DroYak_CAF1 24064 106 - 1
AACGUAGUUUCUGCUUU-UUUGGACCUAUCGUUAAUAUUUUCCUGGAAACCGAGAACUGUGUUG------UUGUUGCCCCGCUUGC-GUUCGCAGGUAGCGAGCAGCGAUCGCA
(((((((((..((.(((-(..(((..(((.....)))...)))..)))).))..)))))))))(------(((((((((..(((((-....)))))..).).)))))))).... ( -30.00)
>DroAna_CAF1 22440 100 - 1
AGAG---------GUUU-UUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG-AUUGUGUUGGAUGUUUUGUUGUU---GUUGCUGCUCGCAGGUAGCGAGAAACGAUCACA
....---------....-......((.(((((((((((..((((((...)))))-)..))))))............((---.((((((((....)))))))).))))))).)). ( -28.20)
>DroPer_CAF1 22319 83 - 1
AACA----------UUU-UUUGGAGUUAUCGUUAAUAUUUUCUUGGAAACCGGG-AUUGUAUUG------UU------------GC-GCUCGCAGGUAGCGAACAGCGAUCGCA
....----------...-......((.(((((((((((..((((((...)))))-)..)))))(------((------------.(-((((....).))))))))))))).)). ( -21.80)
>consensus
AACG_________CUUU_UUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG_AUUGUGUUG______UUG_UGCU___CUUGC_GCUCGCAGGUAGCGAGCAGCGAUCGCA
........................((.(((((((((((...(((((...)))))....)))))........................((((((.....)))))))))))).)). (-19.19 = -19.13 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:17 2006