Locus 5732

Sequence ID 2R_DroMel_CAF1
Location 18,162,738 – 18,162,855
Length 117
Max. P 0.517149
window9179

overview

Window 9

Location 18,162,738 – 18,162,855
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -40.40
Consensus MFE -27.54
Energy contribution -26.40
Covariance contribution -1.14
Combinations/Pair 1.14
Mean z-score -1.14
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.517149
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18162738 117 + 20766785
---UUCAAAACUUAACGCACCAGCAGAGAAGCACAUUCAGCGAGCAGGCAAUCUUCUGCAGAACGGUCACUGCCUCCGAUUUCACGUGGGUAGUCUGCAACUGCUGGCAGGCUGGACACU
---................(((((...(((.....))).((.((((((((......)))....(((..((((((..((......))..)))))))))...))))).))..)))))..... ( -37.70)
>DroPse_CAF1 5471 111 + 1
---------AUUGGGCCUACCAGCAGAGAAGAACGUUCAGGGUGCAGGCGAUUUUCUGUAGACAGGUGACGGCCUCGCGUUCCAGGCGCGUCGUCUGCCACUGUCGGCAGGCUGGGCACU
---------.((.(((((.((.((((((((...((((.........)))).)))))))).(((((..((((((...((((.....)))))))))).....))))))).))))).)).... ( -40.90)
>DroSec_CAF1 10317 114 + 1
---U---CAUGUUAUUUCACCAGCAGAGAAGCACAUUCAGCGAGCAGGCAAUCUUCUGCAGAACGGUCACUGCCUCCGACUUCACGUGGGUAGUCUGCAACUGCUCGCAGGCUGGACACU
---.---............(((((...(((.....))).(((((((((((......)))....(((..((((((..((......))..)))))))))...))))))))..)))))..... ( -41.50)
>DroSim_CAF1 10211 114 + 1
---U---CAUGUUAUUUCACCAGCAGAGAAGCACAUUCAGCGAGCAGGCAAUCUUCUGCAGAACGGUCACUGCCUCCGACUUCACGUGGGUAGUCUGCAACUGCUCGCAGGCUGGACACU
---.---............(((((...(((.....))).(((((((((((......)))....(((..((((((..((......))..)))))))))...))))))))..)))))..... ( -41.50)
>DroYak_CAF1 5547 120 + 1
GUUUUCCAAACUUUACGCACCAGCAGAGCAGCACAUUCAGCGAGCAGGCGAGCUUCUGUAGAAAGGUGACUGCCUCCGACUUCACGUGGGUGGUCUGCAACUGCUGGCAGGCUGGACACU
....((((........((.(((((((.(((((((...(((.((((......))))))).......)))((..((..((......))..))..))))))..)))))))...)))))).... ( -38.00)
>DroPer_CAF1 8647 111 + 1
---------AUUGGGCCUACCAGCAGAGAAGAACGUUCAGGGUGCAGGCGAUUUUCUGUAGACAGGUGACGGCCUCGCGUUCCAGGCGCGUAGUCUGCCACUGUCGGCAGGCUGGGCACU
---------.....((((.........(((.....))).(..(((((((..((.((((....)))).))..)))).)))..).))))((.(((((((((......))))))))).))... ( -42.80)
>consensus
___U____AACUUAACCCACCAGCAGAGAAGCACAUUCAGCGAGCAGGCAAUCUUCUGCAGAAAGGUCACUGCCUCCGACUUCACGUGGGUAGUCUGCAACUGCUGGCAGGCUGGACACU
...................(((((...................((((((...............(((....))).((.((.....)).))..))))))..(((....))))))))..... (-27.54 = -26.40 +  -1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:57 2006