Locus 5725

Sequence ID 2R_DroMel_CAF1
Location 18,145,245 – 18,145,338
Length 93
Max. P 0.988475
window9166

overview

Window 6

Location 18,145,245 – 18,145,338
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 75.50
Mean single sequence MFE -27.62
Consensus MFE -15.18
Energy contribution -16.02
Covariance contribution 0.84
Combinations/Pair 1.35
Mean z-score -2.55
Structure conservation index 0.55
SVM decision value 2.12
SVM RNA-class probability 0.988475
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18145245 93 + 20766785
AAUCGGCAACAAUUGGUGUUUCUACAGC-----UGUUGACU--AAAGAAAUACCGGUGUGCACACAC--UGUCAAGGCCUAUCGAUAAGA-AAUCGAUGGGUC
....(((.......(((((((((..(((-----....).))--..)))))))))(((((....))))--))))..(((((((((((....-.))))))))))) ( -33.90)
>DroPse_CAF1 26383 94 + 1
G---CGCAACAAUUAGUGGUUUGGUGGCCUCGAUGUUUAUUCCAAGUUAA-----AUGUGGACACACCAUGCUGAAG-AUAUCGAUGUUAGUAUCGAUGGUUC
.---(((........)))((.(((((...((.(((((((........)))-----)))).))..))))).)).(((.-.((((((((....)))))))).))) ( -22.80)
>DroSec_CAF1 28878 93 + 1
AAUCGGCAACAAUUGGUGUUUUUACAGC-----UGUUGACU--AAAAUAAUACCGGUGUGCACACAC--UGCCAAGCCCUAUCGAUAAGA-AAUCGAUGGGUC
....(((..((((.(.(((....))).)-----.))))...--...........(((((....))))--))))....(((((((((....-.))))))))).. ( -27.50)
>DroSim_CAF1 30810 93 + 1
AAUCGGCAACAAUUGGUGUUUCUACAGC-----UGUUGACU--AAAAUAAUACCGGUGUGCACACAC--UGCCAAGCCCUAUCGAUAAGA-AAUCGAUGGGUC
....(((..((((.(.(((....))).)-----.))))...--...........(((((....))))--))))....(((((((((....-.))))))))).. ( -27.50)
>DroEre_CAF1 30354 93 + 1
AACCAGCAACAAUUGCUGUUGCUACAGC-----UGUUGGAC--AAAUUAAUACUGGUGUGCAUACAC--UGCCGAAGUCUAUCGAUAAGA-AAUCGAUAGGCC
..((((((......(((((....)))))-----))))))..--..........(((((((....)))--.))))..((((((((((....-.)))))))))). ( -30.00)
>DroYak_CAF1 30456 93 + 1
AACCAGCAACAAUUGGUGUUGCUACAAC-----UGUUGGAU--UAACUAAUACUGGUGUGCACACAC--UGCCGAUGCACGUCGAUAAGA-AAUCGAUAAGUC
.((((((((((.....))))))).....-----((((((..--...))))))..)))((((((....--....).)))))((((((....-.))))))..... ( -24.00)
>consensus
AAUCGGCAACAAUUGGUGUUUCUACAGC_____UGUUGACU__AAAAUAAUACCGGUGUGCACACAC__UGCCAAGGCCUAUCGAUAAGA_AAUCGAUGGGUC
..((((((......(.(((....))).).....))))))...............((((((....)))...)))...((((((((((......)))))))))). (-15.18 = -16.02 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:45 2006