Locus 5724

Sequence ID 2R_DroMel_CAF1
Location 18,143,002 – 18,143,111
Length 109
Max. P 0.571619
window9165

overview

Window 5

Location 18,143,002 – 18,143,111
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.51
Mean single sequence MFE -41.50
Consensus MFE -18.94
Energy contribution -19.03
Covariance contribution 0.09
Combinations/Pair 1.37
Mean z-score -2.14
Structure conservation index 0.46
SVM decision value 0.08
SVM RNA-class probability 0.571619
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18143002 109 - 20766785
UCUUCCCAGAGGCCUUCACAUAAUUGCUGACUUUGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGCGAGGAUGGCAGAACCUCCGAAGUCACGGGAUCU
...((((...((((((((((....((.(((((((....((.....)).))))))).)).)).))))))))..((((..(((.((.....)))))...)))).))))... ( -38.50)
>DroPse_CAF1 24253 103 - 1
GCUGCCCAGUGGGCUCAUCGUAUUGCCAGACUUUGUCAGCGAUGCGGAGGAGGCGACGCUGCUUAGAUCCAUUGCCGAAGAUGGCAGAUCGUAUGAGGGCA------CC
..(((((.((.(.(((.(((((((((..(((...))).)))))))))..))).).))........((((...((((......))))))))......)))))------.. ( -38.80)
>DroSec_CAF1 26645 109 - 1
UCUUCCCGGAGGCCUUCACAUAAUAGCUGACUUUGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGAGAGGAUGGCAGAACCUCCGAAGGCACGGGAACU
..((((((...((((((....(((((((((((((....((.....)).)))))))..))))))((((((((((......))))))....)))).)))))).)))))).. ( -46.00)
>DroSim_CAF1 28570 109 - 1
UCUUCCCGGAGGCCUUCACAUAAUAGCUGACUUCGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGAGAGGAUGGCAGAACCUCCGAAGGCACGGGAACU
..((((((...((((((....(((((((((((((....((.....)).)))))))..))))))((((((((((......))))))....)))).)))))).)))))).. ( -47.70)
>DroYak_CAF1 28228 109 - 1
UCUUCCCAAUGGUCUUCAUGUAAUUGCUGACUUUGUCAGCGAAGAGGAGGAGUCAACACUGUUGAGGGCCAUUGGUGGGGAUGGCAGAACCUCCGAAGUCACGGGAACU
..(((((..(((.((((......((((((((...))))))))...(((((..(((((...)))))..((((((......))))))....)))))))))))).))))).. ( -42.00)
>DroPer_CAF1 24918 103 - 1
GCUGCCCAGUGGGCUCAUUGUACUGCCAGACUUUGUCAGCGAUGCGGAGGAGGCGACGCUGCUUAGAUCCAUUGCCGAAGAUGGCAGAUCUUAUGAGGGCA------CC
(((((((...))))((((....((((((..(((((...(((((..(((..(((((....)))))...))))))))))))).)))))).....)))).))).------.. ( -36.00)
>consensus
UCUUCCCAGAGGCCUUCACAUAAUAGCUGACUUUGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGCGAGGAUGGCAGAACCUCCGAAGGCACGGGAACU
.((((((((.((((((((.(((.....(((((((..(........)..)))))))....))))))))))).)))).))))............................. (-18.94 = -19.03 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:44 2006