| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,956,144 – 2,956,248 |
| Length | 104 |
| Max. P | 0.656664 |
| Location | 2,956,144 – 2,956,248 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.83 |
| Mean single sequence MFE | -32.12 |
| Consensus MFE | -25.34 |
| Energy contribution | -25.73 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2956144 104 + 20766785 AUGGAAUCCACGCUUACAUGGGGAAAAACCCGUCGUUUCUCAGGCCAAAGGCUUCCUCCAGCGGCGGAAUCUUCUCCUCACAGUUGUCGUGCGCCCGGCAGCAC ...................((((((....((((((((....(((((...))))).....))))))))....)))))).....(((((((......))))))).. ( -32.10) >DroPse_CAF1 5654 96 + 1 ---AA-----AUCUUACAUGGGGAAGAUCCCAUCGUUGCUAAGGCCAUAGUCUUCCUGCUGCGGUGAUAUUUUUUCCUUGCAGUUGUCGUGCGAGCGACAGCAU ---..-----......((.((..(((((..((((((.((.(((((....)))))...)).))))))..)))))..)).))..((((((((....)))))))).. ( -34.80) >DroSec_CAF1 3470 104 + 1 AUGGAAUCCACGCUUACAUGGGGAAAAUCCCGUCGUUUCUCAGGCCAAAGGCUUCCUCCAGCGGCGGAAUCUUCUCCUCACAGUUGUCGUGCGCCCGGCAGCAC ...................((((((.((.((((((((....(((((...))))).....)))))))).)).)))))).....(((((((......))))))).. ( -33.40) >DroSim_CAF1 3563 104 + 1 AUGGAAUCCACGCUUACAUGGGGAAAAUCCCGUCGUUUCUCAGGCCAAAGGCUUCCUCCAGCGGCAGAAUCUUCUCCUCACAGUUGUCGUGCGCCCGGCAGCAC ..(((...............(((.....)))((((((....(((((...))))).....)))))).........))).....(((((((......))))))).. ( -27.50) >DroYak_CAF1 3504 104 + 1 AUGAAAUCCACUCUUACAUGGGAAAAAUUCCGUCGUUUUUCAGUCCGAAGGCUUCCUCCAGCGGCGGAAUCUUUUCCCCACAGUUGUCGUGCGCCCGGCAGCAC ...................((((((((((((((((((....((((....))))......))))))))))).)))))))....(((((((......))))))).. ( -34.90) >DroPer_CAF1 3624 96 + 1 ---AA-----AUCUUACAUGGGGAAGAUCCCAUCGUUGCUCAGGCCAUAGUCUUCCUGCUGCGGUGAUAUUUUAUCCUUGCAGUUGUCGUGCGAGCGACAGCAU ---..-----......((.((..(((((..((((((.((..((((....))))....)).))))))..)))))..)).))..((((((((....)))))))).. ( -30.00) >consensus AUGAAAUCCACGCUUACAUGGGGAAAAUCCCGUCGUUUCUCAGGCCAAAGGCUUCCUCCAGCGGCGGAAUCUUCUCCUCACAGUUGUCGUGCGCCCGGCAGCAC ...................((((((.((.(((((((.....(((((...)))))......))))))).)).)))))).....(((((((......))))))).. (-25.34 = -25.73 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:54 2006