Locus 5715

Sequence ID 2R_DroMel_CAF1
Location 18,103,315 – 18,103,432
Length 117
Max. P 0.609640
window9153

overview

Window 3

Location 18,103,315 – 18,103,432
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.76
Mean single sequence MFE -26.40
Consensus MFE -22.51
Energy contribution -22.97
Covariance contribution 0.45
Combinations/Pair 1.16
Mean z-score -0.95
Structure conservation index 0.85
SVM decision value 0.15
SVM RNA-class probability 0.609640
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18103315 117 - 20766785
AUCGAAAUGUUAAAUGCUGGUUUAACGCAUGUUGGCUAGGAUUCAAGGAACUACUAGGACGCGGUAACUCCUGGU---UUGGUCAUUAAAUGAUACAAAAUUAUACUUUACAAGUAACUU
........(((((((....))))))).(((..((((((((.....((((..((((.......))))..))))..)---)))))))....)))...........((((.....)))).... ( -19.50)
>DroSec_CAF1 54638 99 - 1
AUCAAAAUGUUAGUUGCUGGCUCAACGCAUGUUGGCUAGGAUUCAAGGAACUACUAGGACGCGGGGACUCCUGGUGGUAGAGUCAUUAAAUUAU---------------------AACUU
...........((((((((((.((((....)))))))))(((((.....((((((((((...(....))))))))))).))))).........)---------------------)))). ( -30.30)
>DroSim_CAF1 55823 99 - 1
AUCAAAAUGUUAGUUGCUGGCUCAACGCAUGUUGGCUAGGAUUCAAGGAACUACUGGGACGCGGGGACUCCUGGUGGUAGAGUCAUUAAAUGAU---------------------AACUU
((((............(((((.((((....)))))))))(((((.....(((((..(((...(....))))..))))).)))))......))))---------------------..... ( -29.40)
>consensus
AUCAAAAUGUUAGUUGCUGGCUCAACGCAUGUUGGCUAGGAUUCAAGGAACUACUAGGACGCGGGGACUCCUGGUGGUAGAGUCAUUAAAUGAU_____________________AACUU
................(((((.((((....)))))))))(((((.....((((((((((...(....))))))))))).))))).................................... (-22.51 = -22.97 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:32 2006