| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,954,150 – 2,954,270 |
| Length | 120 |
| Max. P | 0.728526 |
| Location | 2,954,150 – 2,954,270 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.11 |
| Mean single sequence MFE | -38.98 |
| Consensus MFE | -25.08 |
| Energy contribution | -24.67 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2954150 120 - 20766785 GUGAGCCAUUGGGUGUGUUGAAGACCUGAGCCAGUUGGGUGGCGGGCAGAUCGAGGAUACAGUUGACCAGAAAGAUUGGCUUGUUGAACUGCAGCAGGUGUUGAGUAAUAAGCGAACCGU ....(((.(..(((.(.....).)))..)((((......)))).))).......((...(((((.........)))))(((((((..(((.((((....))))))))))))))...)).. ( -32.70) >DroVir_CAF1 1512 120 - 1 GCGAGCCAUUGGGCGUGUUAAAGAUUUGCGCCAGCUGCACAGCAGGCAGCUCCAGAAUGCAGUUGACUAGGAAGAUGGGCUUAUUAAACUGAAGCACAUGUUGCACUAUAAGUGAUCCAU (((((((....)))(((((..((......(((.(((....))).)))(((.(((...(.(((....)).).)...)))))).......))..)))))...))))................ ( -29.30) >DroPse_CAF1 3589 120 - 1 GGGAGCCGUUGGGCGUGUUAAAGAUCUGGGCUAGUUGAGCGGCUGGCAGAUCGAGGAUGCAGUUGACCAGGAAAAUGGGUUUGUUGAACUGCAGUACAUGCUGAGCAAUCAGCGAGCCAU ((..(((....)))(((((...(((((..(((((((....))))))))))))...)))))......)).........((((((((((....((((....)))).....)))))))))).. ( -42.60) >DroGri_CAF1 1572 120 - 1 GCGAGCCAUUUGGUGUGUUAAAGAUCUGUGCCAGCUGCACAGCGGGCAAAUCCAGAAUGCAAUUGACCAAAUAGAUGGGCUUGUUGAAUUGGAGCAGAUGCUGGACCAUCAGCGAGCCAU .......((((((((((((...(((...((((.(((....))).)))).)))...))))).....))))))).....((((((((((..((((((....)))...))))))))))))).. ( -39.80) >DroMoj_CAF1 1331 120 - 1 GGGAGCCAUUUGGCGUGUUGAACACUUGCGCCAGCUGCGCAGCCGGCAAUUCCAGAAUGCUGUUGACCAGGAAAAUGGGCUUGUUGAAUUUCAGCAAAUGCUGAGCUAUCAGCGAGCCAU (((((((....((((((.....))).(((((.....)))))))))))..))))....(.(((.....))).).....((((((((((..((((((....))))))...)))))))))).. ( -45.80) >DroAna_CAF1 1555 120 - 1 GGGAGCCGUUGGGGGUGUUGAAAACCUGGGCCAGCUGAGAGGCUGGCAGAUCUAGAAUGCAAUUCACCAGGAAGAUGGGUUUGUUGAAUUGUAGAAGGUGUUGGGCUAUCAGGGAGCCGU .((..((.((((....(((.((.((((..(((((((....)))))))...((((.(((.((((...(((......)))....)))).))).)))))))).)).)))..))))))..)).. ( -43.70) >consensus GGGAGCCAUUGGGCGUGUUAAAGACCUGCGCCAGCUGCGCAGCGGGCAGAUCCAGAAUGCAGUUGACCAGGAAGAUGGGCUUGUUGAACUGCAGCAGAUGCUGAGCUAUCAGCGAGCCAU ....(((....)))(((((..........(((.(((....))).)))........))))).................((((((((((....((((....)))).....)))))))))).. (-25.08 = -24.67 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006