Locus 57

Sequence ID 2R_DroMel_CAF1
Location 1,311,924 – 1,312,044
Length 120
Max. P 0.575552
window109

overview

Window 9

Location 1,311,924 – 1,312,044
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -45.67
Consensus MFE -43.22
Energy contribution -43.80
Covariance contribution 0.58
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.95
SVM decision value 0.08
SVM RNA-class probability 0.575552
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1311924 120 - 20766785
UCUGCGCCUGCGCCUGGCUCAGCUGAGCGAAAGCUGAGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCCCCGACUUGGCCCGAUGAGUCCAUA
...(((....))).((((((((((.(((....))).)))((((((((....))))))))(((((((((.(........)))).))))))((((.((.......)).)))))))).))).. ( -46.60)
>DroSec_CAF1 30324 120 - 1
UCUGCGCCUGCGCCCGGCUCAGCUGAGCGCAAGCUGAGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCGCCGACUUGGCCCGAUGAGUCCAUA
...(((....)))..(((((((((.(((....))).)))((((((((....))))))(((((((.(((((.((((...((.....)).))))))))).))))))).))..)))))).... ( -50.20)
>DroSim_CAF1 9275 109 - 1
UCUGCGCCUGCGCCUGGCUCAGCUG-----------AGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCGCCGACUUGGCCCGAUGAGUCCAUA
.....((((((((.((..((.((((-----------(.(((((((((....)))))))).).))))).....))..))))))).)))..((((..(((.....))))))).......... ( -40.20)
>consensus
UCUGCGCCUGCGCCUGGCUCAGCUGAGCG_AAGCUGAGCGGAAGCUUCUUCAAGCUUUUAGGUCAGCGACACGAAUCAGCGCAUGGCCUUCGGUCGCCGACUUGGCCCGAUGAGUCCAUA
...(((....)))..(((((((((.(((....))).)))((((((((....))))))(((((((.(((((.((((...((.....)).))))))))).))))))).))..)))))).... (-43.22 = -43.80 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:03 2006