Locus 5691

Sequence ID 2R_DroMel_CAF1
Location 18,031,053 – 18,031,170
Length 117
Max. P 0.983570
window9111

overview

Window 1

Location 18,031,053 – 18,031,170
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.74
Mean single sequence MFE -27.93
Consensus MFE -27.78
Energy contribution -27.78
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 0.99
SVM decision value 1.95
SVM RNA-class probability 0.983570
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18031053 117 + 20766785
UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC---UACUG
...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90)
>DroSec_CAF1 44974 117 + 1
UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC---UACUG
...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90)
>DroSim_CAF1 44026 117 + 1
UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC---UACUG
...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90)
>DroEre_CAF1 46686 117 + 1
UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUUC---UACUG
...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90)
>DroYak_CAF1 44918 117 + 1
UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUACC---UACUG
...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......))).........---..... ( -27.90)
>DroAna_CAF1 39852 120 + 1
UUUGGGAUAUUUUUGGAUUUUGGUUUCGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCCGCCCACUC
..((((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))......(((.......)))..........))))... ( -28.10)
>consensus
UUUGGGAUAUUUUUGGAUUUUGGUUUUGCAAAUGGAUUUAUAACCCCUUGUGUGAUUUUAUAGGCCCUUAAGCCAUUGUUCAAAUAACCCGGCGUGCCAAGCCACCAAUUCC___UACUG
...(((.....(((((((..((((((.((..(((((.(((((........))))).)))))..))....))))))..)))))))...)))(((.......)))................. (-27.78 = -27.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:53 2006