Locus 5688

Sequence ID 2R_DroMel_CAF1
Location 18,024,425 – 18,024,528
Length 103
Max. P 0.898541
window9108

overview

Window 8

Location 18,024,425 – 18,024,528
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 96.31
Mean single sequence MFE -27.86
Consensus MFE -24.22
Energy contribution -24.22
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.62
Structure conservation index 0.87
SVM decision value 1.00
SVM RNA-class probability 0.898541
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18024425 103 + 20766785
ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUGAGCAAAUUAUGUACAGAGA
((((((((((((...))))).....)))))))......(((((((((.((.....)).)))))))))......(((((((..(((.....)))..))))))). ( -32.50)
>DroSec_CAF1 38378 103 + 1
ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUUAGCAAAUUAGGUACAGAGA
....((((((((...))))))))..((((.........(((((((((.((.....)).)))))))))...(.((((..(((....)))....)))).).)))) ( -26.60)
>DroSim_CAF1 37397 103 + 1
ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUUAGCAAAUUAGGUACAGAGA
....((((((((...))))))))..((((.........(((((((((.((.....)).)))))))))...(.((((..(((....)))....)))).).)))) ( -26.60)
>DroEre_CAF1 39975 103 + 1
ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUGCGCUAGGCAGGAGUAGCCAUGAAAGGGCUUUGUGUGUUAGCAAAUUAGGUAAAGGGA
((((((((((((...))))).....)))))))...(((..(((((..(((((.((.(...((((.......))))...).))))))).)))))..)))..... ( -25.80)
>DroYak_CAF1 38045 103 + 1
ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGAAGCCAUGAAAGGGCUUUGUGUGUUAGCAAAUUAGGUACAGGGA
.(((((((((((...)))))))).((((..((((.........))))(((((.((.(.((((((.......)))))).).))))))).....)))).)))... ( -27.80)
>consensus
ACUGGGAUGCAUUGGAUGCAUUCGAUCUCAGUGAAUUAAGUGGUUACGCUAGGCAGGAGUAGCCAUUAAAGGACUUUGUGUGUUAGCAAAUUAGGUACAGAGA
....((((((((...))))))))..((((.((...((.(((((((((.((.....)).))))))))).))..))(((((......))))).........)))) (-24.22 = -24.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:50 2006