Locus 568

Sequence ID 2R_DroMel_CAF1
Location 2,938,216 – 2,938,324
Length 108
Max. P 0.855199
window1042

overview

Window 2

Location 2,938,216 – 2,938,324
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 80.95
Mean single sequence MFE -19.52
Consensus MFE -15.25
Energy contribution -16.00
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.80
SVM RNA-class probability 0.855199
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2938216 108 - 20766785
AAAUUAAUAUAUUAUUUUUUGCGGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUCGUAUGUGCAGAUGCCCCCCUCCCCCUG
.................((((((((((...))))((((((((....))))).)))..))))))....((((..(((((....)))))....))))............. ( -24.70)
>DroSec_CAF1 2111 81 - 1
AAAUUAAUAUAUUAUUUUUUGCGGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUC---------------------------
.......((((((.(((((((((((((...))))((((((((....))))).)))..)))))).))).....))))))...--------------------------- ( -18.90)
>DroSim_CAF1 1270 81 - 1
AAAUUAAUAUAUUAUUUUUUGCCGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUC---------------------------
.......((((((.((((((((.((((...))))((((((((....))))).)))...))))).))).....))))))...--------------------------- ( -16.50)
>DroYak_CAF1 2381 81 - 1
AAAUUAAUAUAUUAUAUUGUGCGGUGCCUUGCACGCGUUGACACUUGUCACAUGUAUCGCAAAUAGAGCAUAAGUAUAUGC---------------------------
..............((((.((((((((...))))((((((((....)))).))))..))))))))..(((((....)))))--------------------------- ( -18.00)
>consensus
AAAUUAAUAUAUUAUUUUUUGCGGUGCCUUGCACGCGCUGACACUUGUCAGAUGUAUCGCAAAUAAAGCAUAAAUAUACUC___________________________
.................((((((((((...))))((((((((....))))).)))..))))))............................................. (-15.25 = -16.00 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:50 2006