Locus 566

Sequence ID 2R_DroMel_CAF1
Location 2,928,731 – 2,928,827
Length 96
Max. P 0.500000
window1040

overview

Window 0

Location 2,928,731 – 2,928,827
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 92.88
Mean single sequence MFE -30.23
Consensus MFE -26.05
Energy contribution -25.55
Covariance contribution -0.50
Combinations/Pair 1.15
Mean z-score -1.39
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2928731 96 - 20766785
GGAGCCGGGCUGGGUUAUGGGGCAACACUGCCGCUUAUUAGAAAUGGUAAACAAACAGUCAGAUCGUGUUGAACUUUAUGGUCCUCCAUGCCGGAU
((((...(((((.(((..(.((((....)))).).(((((....))))))))...))))).(((((((........)))))))))))......... ( -28.40)
>DroSec_CAF1 17416 96 - 1
AGAGCCGGGCUGGGUUAUGGUUCACCAUUGCUGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCGUGUUGAACUUUAUGGUCCUCCAUACCGGAU
....(((((((((((.((((....)))).)))(.((((((....)))))).)...))))).(((((((........)))))))........))).. ( -28.90)
>DroSim_CAF1 21400 96 - 1
GGAGCCGGGCUGGGUUAUGGUUCACCACUGCCGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCGUGUUGAACUUUAUGGUCCUCCAUGCCGGAU
((((...((((((((..(((....)))..)))(.((((((....)))))).)...))))).(((((((........)))))))))))......... ( -32.00)
>DroEre_CAF1 18890 95 - 1
GGAGCCGGGCUGGGUUAUGCGGCACCGCAGCCGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCA-GUUGAACUUUAUGGUCCUCCAUGCCGGAU
((((...(((((.(((..(((((......))))).(((((....))))))))...))))).(((((-...........)))))))))......... ( -31.60)
>consensus
GGAGCCGGGCUGGGUUAUGGGGCACCACUGCCGCUUAUUAGAAAUGGUAAACAAACAGCCAGAUCGUGUUGAACUUUAUGGUCCUCCAUGCCGGAU
....(((((((((((..((......))..)))(.((((((....)))))).)...))))).(((((((........)))))))........))).. (-26.05 = -25.55 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:48 2006