Locus 5657

Sequence ID 2R_DroMel_CAF1
Location 17,958,789 – 17,958,883
Length 94
Max. P 0.677076
window9067

overview

Window 7

Location 17,958,789 – 17,958,883
Length 94
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 73.71
Mean single sequence MFE -32.49
Consensus MFE -7.93
Energy contribution -9.09
Covariance contribution 1.16
Combinations/Pair 1.26
Mean z-score -1.70
Structure conservation index 0.24
SVM decision value 0.30
SVM RNA-class probability 0.677076
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17958789 94 + 20766785
CUGGCAUUU-CCCAACUCCC-AGCCCUCGGAAUCUCGACCCAACCCUUUUU--UUUUUUGGUCUGCGAGGGUG--GGGCUG-----------GGGACUUUUCAUAAUUAAU
.......((-((((.(.(((-(.(((((((.....)((((...........--......))))..))))))))--))).))-----------))))............... ( -28.93)
>DroSec_CAF1 16074 89 + 1
CUGGCAUUU-CCCAACUCCC-AGCCCUCGGAAUCUCAAGCCAACCCUUU------UUUUGGUCUGCGG-GGUG--GUGCUG-----------GGGACUUUUCAUAAUUAAU
.......((-((((.(..((-(.(((.(((........(((((......------..)))))))).))-).))--).).))-----------))))............... ( -23.60)
>DroSim_CAF1 11749 90 + 1
CUGGCAUUU-CCCCACUCCC-AGCCCUCGGAAUCUCAAGCCAACCCUUU------UUUUGGUCUGCGGGGGUG--GUGCUG-----------GGGACUUUUCAUAAUUAAU
.(((.(..(-((((((.((.-.(((((((......((..((((......------..))))..))))))))))--).).))-----------))))..).)))........ ( -28.70)
>DroEre_CAF1 20607 99 + 1
CUGGCGUUUCCCCCACUUC--AGCGCUCGGAAUCUCAGCCCAGUCCUUUUGGGGC--------UGCGGGGGUG--CGGCUGGGGCUGGGCUUGGGACUUUUCAUAAUUAAU
((((((((...........--))))).)))..(((((((((((((((.....(((--------((((....))--))))))))))))))).)))))............... ( -40.30)
>DroYak_CAF1 19697 106 + 1
CUUG-----CCCCAACUCCCUUGCCCUCGGAAUCUCAGCCCUGUCCUUAUGGGGCUUUGGGUCUGCGGUGGUGUGGGGGUGGGACUCGGGCUGGGACUUUUCAUAAUUAAU
((.(-----(((....((((..(((((((..(((.((((((.((((.....))))...))).))).)))....)))))))))))...)))).))................. ( -40.90)
>consensus
CUGGCAUUU_CCCAACUCCC_AGCCCUCGGAAUCUCAACCCAACCCUUUU_____UUUUGGUCUGCGGGGGUG__GGGCUG___________GGGACUUUUCAUAAUUAAU
..........(((....(((..(((((((......((..((((..............))))..)))))))))...)))..............)))................ ( -7.93 =  -9.09 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:10 2006