Locus 5655

Sequence ID 2R_DroMel_CAF1
Location 17,957,446 – 17,957,551
Length 105
Max. P 0.997283
window9065

overview

Window 5

Location 17,957,446 – 17,957,551
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 95.23
Mean single sequence MFE -37.18
Consensus MFE -31.58
Energy contribution -32.74
Covariance contribution 1.16
Combinations/Pair 1.03
Mean z-score -2.59
Structure conservation index 0.85
SVM decision value 2.83
SVM RNA-class probability 0.997283
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17957446 105 - 20766785
UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCUGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUCGGGCCGGCUUUCU
.....((((((((...((((((..((((....((.(((..(((((.....)))))(((((....))))))))))..))))..))...))))..)))))))).... ( -39.80)
>DroSec_CAF1 14728 105 - 1
UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCAGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUCCGGCCGGCUUUCU
.....((((((((...(((((((((...)).)))......(((((.....)))))))))....((((((..(....).((....)).)))))))))))))).... ( -39.20)
>DroSim_CAF1 10461 105 - 1
UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCAGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUCCGGCCGGCUUUCU
.....((((((((...(((((((((...)).)))......(((((.....)))))))))....((((((..(....).((....)).)))))))))))))).... ( -39.20)
>DroEre_CAF1 19270 103 - 1
UUCCCAGCUGGCCAUAAGCAGAUCCCACGGCAUCAGAAGCGGCACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUGGCUC-GC-CGGCUUUCU
.....(((((((....(((.((..(((((((((.(((((.....))))).)))))(((((....))))).......))))..))....))).-))-))))).... ( -37.00)
>DroYak_CAF1 18258 104 - 1
UUCCCAGCUGGCCAUAAGCAGAUCCCACGGCAUCAGAAGCGCCACUUUUACUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUACUC-GCCCGGCUUUCU
.....(((((((..((((..((..((((((((..(((((.....)))))..))))(((((....))))).......))))..)).))))...-).)))))).... ( -30.70)
>consensus
UUCCCAGCUGGCCAUAAGCAGAUCCCACGGAAUCAGAAGCGGUACUUUUAGUGCCUGCUCAAUGGAGCAUUCGAAAGUGGUUUUCCUUGCUC_GGCCGGCUUUCU
.....((((((((...((((((..((((....((.(((..(((((.....)))))(((((....))))))))))..))))..))...))))..)))))))).... (-31.58 = -32.74 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:08 2006