| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,919,650 – 2,919,758 |
| Length | 108 |
| Max. P | 0.915151 |
| Location | 2,919,650 – 2,919,758 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.99 |
| Mean single sequence MFE | -28.04 |
| Consensus MFE | -13.24 |
| Energy contribution | -13.88 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2919650 108 + 20766785 AAAAGUUAUUUCUAUCGAAAACAGAGUGACCGUUGCCGAAAAAACGGUUCCUUGUUCGAGGUUGGGCACUUCGCUGC--GCUCUUAGCCAGCACUCCAACCACAUGAUCA---------- ..............(((((....(((..((((((........))))))..))).)))))(((((((......((((.--((.....))))))..))))))).........---------- ( -34.10) >DroSec_CAF1 8829 107 + 1 AAAAGUUAUUUCUAUCGAAAACAGAGUGACCGUUGCCGAA-AAACGGUUUCUAAUUCGUGGUUGAGCACUUCGCUGC--GCUCUUAGCCAGCACUCAAACCACGUGAUCA---------- ................((..((.(((((((((((......-.)))))))....))))(((((((((......((((.--((.....)))))).))).))))))))..)).---------- ( -29.20) >DroSim_CAF1 11013 109 + 1 AAAAGUUAUUACUAUCGAAAACAGAGUGACCGUUGCCGUA-AAACGGUUCCUAACUCGAGGUUGAGCACUUCGCUGCUGGCACUUAGCCAGCACUCCAACCACGUGAUCA---------- .......(((((..((((......((..((((((......-.))))))..))...))))((((((((.....)))((((((.....))))))....)))))..)))))..---------- ( -36.50) >DroEre_CAF1 9504 117 + 1 AAAACUUAUUUCUAUCGAAAAUAGAGUUACCGUAGCCAAA-AUAUAUUUCCCAAAUCUAGGUUGAGAACUUUGCUGC--GCCUUAAGCCAGCACUCCAACCAUACAAUCAUACCAUUCUC ..(((((.((((....))))...)))))............-..................(((((.((....(((((.--((.....))))))).)))))))................... ( -18.50) >DroYak_CAF1 8673 107 + 1 CAAAAUGAUUUCUAUCGAAAAUAGAGUGACCGCAGGCACA-AUACAUUUCACAAAUCGUGGUUGAGCUCUUUGCUGC--GAUUUAAGCCAGUAUUCCAACCACAUAAUUA---------- ..(((((...(((((.....)))))(((.((...))))).-...)))))........((((((((((.....)))((--.......))........))))))).......---------- ( -21.90) >consensus AAAAGUUAUUUCUAUCGAAAACAGAGUGACCGUUGCCGAA_AAACGGUUCCUAAAUCGAGGUUGAGCACUUCGCUGC__GCUCUUAGCCAGCACUCCAACCACAUGAUCA__________ ................((.....(((((((((((........)))))))....))))..(((((((..((..((((........)))).))..))).))))......))........... (-13.24 = -13.88 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:45 2006