| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,939,633 – 17,939,753 |
| Length | 120 |
| Max. P | 0.894736 |
| Location | 17,939,633 – 17,939,753 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.87 |
| Mean single sequence MFE | -36.87 |
| Consensus MFE | -25.27 |
| Energy contribution | -25.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17939633 120 - 20766785 CAGUCGUCUGCCUUCAUCGCCAAGCUGUCCGUCCGGUCCAAUGGGGCGGAUGUGUGAUAUUUUAUACAUUACUCUUUCAACCUCAAUGACGGCUUGUUGCAUGCAGCGCUAGGAUGCUGA (((.(((((((((.(((((.((((((((((((((.((...)).)))))(((((((((....))))))))).................))))))))).)).))).)).))..)))))))). ( -42.70) >DroEre_CAF1 1588 98 - 1 CAGUCGUCUGC-----------------CC-----GUCCAAUGGGGCGGAUGUGUGAUAUUUUAUACAUUACUCUUUCAACCUCAGUGACGGCUUGUUGCAUACAGCGAACGGAUGUUGA (((.((((((.-----------------((-----(((...(((((..(((((((((....)))))))........))..)))))..))))).((((((....)))))).))))))))). ( -31.30) >DroYak_CAF1 1211 112 - 1 CAGUCGUCUGCCUCCGCUGCCGAACUGUCC-----GUCCAACGGGGCGGAUGUGUGAUAUUUUAUACAUUACUCUUUCAACCUCUAUGACGGCUUGUUGCAUGCAGCGAAUGGCUGU--- (((((((((((..(.((.((((....((((-----((((....))))))))((((((....))))))......................))))..)).)...))))...))))))).--- ( -36.60) >consensus CAGUCGUCUGCCU_C___GCC_A_CUGUCC_____GUCCAAUGGGGCGGAUGUGUGAUAUUUUAUACAUUACUCUUUCAACCUCAAUGACGGCUUGUUGCAUGCAGCGAAAGGAUGUUGA .(((((((...........................((((....)))).(((((((((....))))))))).................)))))))(((((....)))))............ (-25.27 = -25.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:36 2006