| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,921,963 – 17,922,065 |
| Length | 102 |
| Max. P | 0.738492 |
| Location | 17,921,963 – 17,922,065 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17921963 102 - 20766785 CCAAAGUCUAUUCGAUUCUGGAGAAGGCUCGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG----CUAAGUUCAAUCGCGUUAAUG (((.((((.....)))).))).(((((((.(((.((((.((.(((((((((....))))))))).....)))))).)))))----))...)))............. ( -29.70) >DroVir_CAF1 50892 93 - 1 CAAAGGUGUAUUCCAUUCUCGAAAAGGCGCGCUAUGUAAUGGACGAUCCCAAUUAUGGGAUUGUUAAAGCUCAUAGGUAGG----UU----UAAAGAUAAC----- ....((......))..(((..(((....((.(((((.....((((((((((....))))))))))......)))))))...----))----)..)))....----- ( -23.30) >DroSec_CAF1 39186 102 - 1 CAAAAGUCUAUUCCAUUCUGGAGAAGGCUCGAUAUGUGAUGGACGAUCCCAACUAUGCGAUUGUAAAGACGCACAGGUUAG----AUAAGUUCAAUCGCCUUAGUG ....(((((.((((.....)))).)))))......(((((((((.(((....((.((((.((....)).)))).))....)----))..)))).)))))....... ( -23.80) >DroEre_CAF1 39443 93 - 1 CUAAAGUCUAUUCAAUUCUGGAGAAGGCACGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG----AUAAGUUCAA---------UG ((((.((((.((((....))))..))))......((((.((.(((((((((....))))))))).....))))))..))))----..........---------.. ( -25.10) >DroYak_CAF1 40065 102 - 1 CCAAAGUCUAUUCGAUUCUGGAGAAGGCACGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG----AUGAGCUCAAUCGCGUUCAUG (((.((((.....)))).))).(((.((..(((.((((.((.(((((((((....))))))))).....)))))).))).(----((.......))))).)))... ( -32.30) >DroAna_CAF1 68837 105 - 1 CUAAGGUGUAUUCGAUUCUGGAGAAGGCCCGCUAUGUGAUGGACGAUCCUAACUACGGAAUCGUAAAAACACACAGGUUGGUUGCAUAAAUUCAAUUGACUUGAA- .....((((...((((((((.((.(((..((((((...)))).))..)))..)).)))))))).....)))).(((((..((((........))))..)))))..- ( -30.60) >consensus CAAAAGUCUAUUCGAUUCUGGAGAAGGCACGAUAUGUGAUGGACGAUCCCAACUAUGGGAUCGUAAAGACGCACAGGUUAG____AUAAGUUCAAUCGCCUU_AUG .....((((.(((.......))).))))......((((....(((((((((....))))))))).......))))............................... (-16.94 = -17.30 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:27 2006