Locus 5621

Sequence ID 2R_DroMel_CAF1
Location 17,891,949 – 17,892,047
Length 98
Max. P 0.621428
window9011

overview

Window 1

Location 17,891,949 – 17,892,047
Length 98
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 70.99
Mean single sequence MFE -27.78
Consensus MFE -7.09
Energy contribution -9.15
Covariance contribution 2.06
Combinations/Pair 1.17
Mean z-score -3.66
Structure conservation index 0.26
SVM decision value 0.18
SVM RNA-class probability 0.621428
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17891949 98 - 20766785
GGCAUUAUAGUUUU---UCAAUUCCUUGUCAAAUU--AAGAUUAAAGUUUGACCAA--------------ACUUUUC-AGGGUAUUUAAGCUUCGGAUUGUUUGGUCAAA-CUUUAUUC
.......((((((.---.(((....)))..)))))--).((.((((((((((((((--------------((..(((-..(((......)))..)))..)))))))))))-))))).)) ( -31.80)
>DroSec_CAF1 9172 100 - 1
GGCAGAAUAGUUUU---UCAGUUCUGUGUUAAAUACAAAAAAUAAAGUUUGACCAA--------------ACUUUUC-AGGGUAUUUAAGCUUCGGCUAGUUUUGUCCAA-CUUUAUUC
.(((((((.(....---.).))))))).............(((((((((.(((.((--------------(((..((-..(((......)))..))..))))).))).))-))))))). ( -25.50)
>DroSim_CAF1 9568 98 - 1
AGCAGAGAAGUUUU---UUAAUUCUGUCUCAAAUU--AAAAAUAAAGUUUGACCAA--------------ACUUUUC-AGGGUAUUUAAGCUUCGGGUUGUUUGGUCCAA-CUUUAUUC
....((((((....---......)).)))).....--...(((((((((.((((((--------------((..(((-..(((......)))..)))..)))))))).))-))))))). ( -28.10)
>DroYak_CAF1 9388 116 - 1
UGCACUAAAGUUCUUAUUCACUUC---AUAAAAAAUGAAAAAAGUUGUUUGACCAAACUAGUUUGCCUAGAACUUUAAAGGGCAUUUAAGCUUCGGCUUGCUGCGUCCAACUUUUUUCC
........................---.........(((((((((((...(((((........(((((...........)))))..(((((....))))).)).)))))))))))))). ( -25.70)
>consensus
GGCAGAAAAGUUUU___UCAAUUCUGUGUCAAAUA__AAAAAUAAAGUUUGACCAA______________ACUUUUC_AGGGUAUUUAAGCUUCGGCUUGUUUGGUCCAA_CUUUAUUC
........................................(((((((((.((((((..............((((.....))))...(((((....))))).)))))).)).))))))). ( -7.09 =  -9.15 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:16 2006