Locus 562

Sequence ID 2R_DroMel_CAF1
Location 2,914,803 – 2,914,923
Length 120
Max. P 0.796311
window1035

overview

Window 5

Location 2,914,803 – 2,914,923
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.92
Mean single sequence MFE -38.30
Consensus MFE -31.24
Energy contribution -31.28
Covariance contribution 0.04
Combinations/Pair 1.16
Mean z-score -1.59
Structure conservation index 0.82
SVM decision value 0.60
SVM RNA-class probability 0.796311
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2914803 120 + 20766785
AAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAAUACGGAGCCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGAGGUGCAUAUAACAUCGUCCAG
........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((...((((.......)))).))))) ( -42.20)
>DroSec_CAF1 4000 120 + 1
GAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAAUACGGAACCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGAGGUGCAUAUAACAUCGUCCAG
........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((...((((.......)))).))))) ( -42.20)
>DroSim_CAF1 4059 119 + 1
GAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAGUACGGAACCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGA-GUGCAUAUAACAUCGUCCAG
........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((.((-((.......)).)).))))) ( -40.50)
>DroEre_CAF1 4368 120 + 1
GAAACUAACCUCAGAUCUCGUAAAUGCCAUUGCGGAGGCUAAUUCUGGAAAGAAAUAUGGGGCCGAGUGGAUUCCGUCGCUGGGACAAGCUCUUGAAGAGGUACAUAUAACAUCUUCCAG
.......(((((.(..((((((...(((........)))...((((....)))).))))))..)((((...(((((....)))))...)))).....))))).................. ( -30.50)
>DroYak_CAF1 3998 120 + 1
GAAACUAACCGCAGAUCUGGUAAAUGCCAUUGCGGAGGCUAAUUCUGGAAAGAAAUAUGGAGCCGAGUGGGUUCCGUCGCUGGGCCAAGCUCUUGAAGAGGUGCAUAUAACAUCAUCCAG
........((((((...((((....)))))))))).((((..((((....))))..((((((((.....)))))))).....))))..((.(((....))).))................ ( -36.10)
>consensus
GAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAAUACGGAGCCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGAGGUGCAUAUAACAUCGUCCAG
........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((.((.((.......)).)).))))) (-31.24 = -31.28 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:43 2006