Locus 561

Sequence ID 2R_DroMel_CAF1
Location 2,913,745 – 2,913,862
Length 117
Max. P 0.914803
window1034

overview

Window 4

Location 2,913,745 – 2,913,862
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 91.88
Mean single sequence MFE -35.85
Consensus MFE -32.10
Energy contribution -32.10
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.88
Structure conservation index 0.90
SVM decision value 1.10
SVM RNA-class probability 0.914803
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2913745 117 + 20766785
CUCGAUUCUUUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCUGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUAAAAGGGCGUCAGGACUCGGAC
...((((.((((((...((.((.((((((((.....)))))))))).)).))))))...))))......((((.((((((((....((...........))..)))))))))))).. ( -36.50)
>DroSec_CAF1 3004 117 + 1
CUUGAUUAUCUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCAGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUUAAAGGGCGCCAGGACUCGGAC
.((((((.(((.((...((.((.((((((((.....)))))))))).)).)))))....))))))....((((.((((((((....((...........))..)))))))))))).. ( -37.20)
>DroSim_CAF1 3064 117 + 1
CUCGAUUCUCUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCAGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUAAAAGGGCGCCAGGACUCGGAC
...((((.(((.((...((.((.((((((((.....)))))))))).)).)))))....))))......((((.((((((((....((...........))..)))))))))))).. ( -36.10)
>DroYak_CAF1 3005 117 + 1
CUUUAUUCUUUAGCCAUUUUCUACCUAUUUCAAUGGGAAAUAGGAGCAGUGCUGAAUGAAAUAAACGAGCUGAAGUCCUGGCUGGAUCAGAACAUUAAAGGGCGACAGGACUCGGCC
.....(((((((((.(((..((.((((((((.....)))))))))).))))))))).)))........(((((.(((((((((.(((......)))....)))..))))))))))). ( -33.60)
>consensus
CUCGAUUCUCUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCAGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUAAAAGGGCGCCAGGACUCGGAC
...((((.((((((...((.((.((((((((.....)))))))))).)).))))))...))))......((((.((((((((....((...........))..)))))))))))).. (-32.10 = -32.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:42 2006