| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,912,486 – 2,912,582 |
| Length | 96 |
| Max. P | 0.577296 |
| Location | 2,912,486 – 2,912,582 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -13.36 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2912486 96 - 20766785 GAACUAAAUU-----AAUUCCGCCAA------------GAUGGGUGCAUCUUGGAUU-CACGAAAAAGGCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUUAAUUUAGGCCAU-- (..(((((((-----((.....((((------------((((....))))))))...-.........((..(.(((.....))).)..))..........)))))))))..)..-- ( -23.50) >DroSec_CAF1 1757 113 - 1 GAACUGAAUUACCAUAAUUCCGUCCAAUGGCAGAAACAUAUGGGCGCAUCUUGGAUU-CGCGAAAAAGCCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUCAAUUUAGGCCAU-- (..(((((((((((......(((((((((.......))).)))))).....((((((-((((.......)))))...))))).))))....((.......)))))))))..)..-- ( -29.40) >DroSim_CAF1 1798 107 - 1 GAACUGAAUU-----AAUUCCGUCCAAUGGCAGA-ACAUAUGUACGCAGCUUGGAUU-CGCGAAAAAGCCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUCAAUUUAGUCUAU-- ..((((((((-----......(((((((((....-.((..((....))...)).(((-((((.......)))))))...))))))).))..((.......))))))))))....-- ( -24.90) >DroEre_CAF1 2190 111 - 1 GGACUGAAAU-----AUUUCCGUCCAGCGACAGAAGCAAAUGGACGCAGUCUAGGUUUCGCGAAAAAGCCGCGAGUAAUCCAUUGGUGCCAGAUUGCAUAUCAAUUUGUGUGACUU ((((((....-----.....((((((((.......))...)))))))))))).((.((((((.......))))))....))...((((((((((((.....))))))).)).))). ( -30.40) >DroYak_CAF1 1690 105 - 1 GGACUGAAUU-----AUUUCAGUCCAAUGACAGAAACAAAUGGACGCAGUCUUGAUUU-GCGAAAAAGCCGCAAAUAAUCCAUUGGUACCAGAUCACAUUUAAAUUUAGGU----- ((((((((..-----..))))))))...............(((((.((((....((((-(((.......))))))).....)))))).)))....................----- ( -26.20) >consensus GAACUGAAUU_____AAUUCCGUCCAAUGACAGAAACAAAUGGACGCAGCUUGGAUU_CGCGAAAAAGCCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUCAAUUUAGGCCAU__ ...(((((((...........(((((..............)))))((....((((((.((((.......))))...))))))...))...............)))))))....... (-13.36 = -13.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:41 2006