Locus 5594

Sequence ID 2R_DroMel_CAF1
Location 17,863,822 – 17,863,916
Length 94
Max. P 0.819519
window8957

overview

Window 7

Location 17,863,822 – 17,863,916
Length 94
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 88.07
Mean single sequence MFE -35.52
Consensus MFE -26.56
Energy contribution -25.56
Covariance contribution -1.00
Combinations/Pair 1.21
Mean z-score -2.00
Structure conservation index 0.75
SVM decision value 0.68
SVM RNA-class probability 0.819519
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17863822 94 - 20766785
UGUGCGUUUGUUCUGCCGCCAUUGUUCGGGAUAUCAGAUACACAU--AUCCUGGCACCGAUGGCGGCGUCUGCCAGGAGAGCC-----ACAAAAAAGGCAG
((((.((((.....((((((((((.(((((((((.........))--)))))))...)))))))))).(((....))))))))-----))).......... ( -34.60)
>DroSec_CAF1 29136 94 - 1
UGUGCGUUUGUUCUGCCGCCAUUGUUCGGGAUAUCAGAUACACAU--AUCCUGGCACCGAUGGCGGCGUCUGCCAGGAGAGCC-----ACAAAAAAGGCAU
.((((.(((((((.((((((((((.(((((((((.........))--)))))))...)))))))))).(((....))))))).-----.....))).)))) ( -34.90)
>DroEre_CAF1 31662 97 - 1
UGCGCGUUUGUUCUGCUGCCAUUGUUCGGGAUAUCAGAUACACAU--AUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGGGCCGGGCCACAAAAAAGGC--
.((.(.(((((...((((((((((..((((((((.........))--))))))....))))))))))(((((((.....)).))))).)))))...)))-- ( -35.00)
>DroYak_CAF1 27792 101 - 1
UGUGCGCCUGUUCCGCUGCCAUUGUCCGGGAUAUCAGAUACACAUAUAUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGAGGCACUAAAAAAAAAAGGCAG
.....((((....(((((((((((..((((((((...........))))))))....)))))))))))..((((......))))...........)))).. ( -37.60)
>consensus
UGUGCGUUUGUUCUGCCGCCAUUGUUCGGGAUAUCAGAUACACAU__AUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGAGCC_____ACAAAAAAGGCAG
.....((((....(((((((((((..((((((...............))))))....)))))))))))(((......)))...............)))).. (-26.56 = -25.56 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:24 2006