Locus 5591

Sequence ID 2R_DroMel_CAF1
Location 17,861,814 – 17,861,926
Length 112
Max. P 0.500000
window8954

overview

Window 4

Location 17,861,814 – 17,861,926
Length 112
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -27.60
Consensus MFE -22.11
Energy contribution -22.00
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.80
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17861814 112 - 20766785
AACAAGAAAAACACUGCGGAGAACAAUCGAAUUUUUGGGGGGGAAAAACCACCGCCAGUAAAAUUCGGUCAAUAUUUGUGCGA----GUGUGCGUGGAGUAGGGAAAUUUUUUGGA
..(((((((....((((........(((((((((((((.((((.....)).)).)))..)))))))))).....((..((((.----...))))..)))))).....))))))).. ( -31.40)
>DroSec_CAF1 27138 115 - 1
AACAAGAAAAACAGUGCGGAAAACAAUCGAAUUUUCGGGGGGGA-AAACCACCGCAAGUGAAAUUCGGUCAAUAUUUGUGCGAGUGAGUGUGCGUGGAGCAGGGAAAUUUUUUGGA
..(((((((....(..((((.....(((((((((((((.((...-...)).))).....)))))))))).....))))..).......(.(((.....))).)....))))))).. ( -27.50)
>DroEre_CAF1 29743 96 - 1
AACAAGAA--------------ACAAUCGAAUUUUCGGGGG-GA-AAACCACCGCCAGUGAAAUUCGGUCAAUAUUUGUGCGA----GUGUGCGUGGAGCAGGGAAAUUUUUUGGA
..((((((--------------(...(((((((((.((.((-..-......)).))...)))))))))((....((..((((.----...))))..)).....))..))))))).. ( -23.90)
>consensus
AACAAGAAAAACA_UGCGGA_AACAAUCGAAUUUUCGGGGGGGA_AAACCACCGCCAGUGAAAUUCGGUCAAUAUUUGUGCGA____GUGUGCGUGGAGCAGGGAAAUUUUUUGGA
..(((((((.................((((((((((((((........)).))).....)))))))))((....((..((((........))))..)).....))..))))))).. (-22.11 = -22.00 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:21 2006