Locus 559

Sequence ID 2R_DroMel_CAF1
Location 2,911,350 – 2,911,464
Length 114
Max. P 0.940521
window1032

overview

Window 2

Location 2,911,350 – 2,911,464
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -25.37
Consensus MFE -22.09
Energy contribution -21.87
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.11
Structure conservation index 0.87
SVM decision value 1.31
SVM RNA-class probability 0.940521
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2911350 114 - 20766785
CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUAUUGUAGAAAGAGGAAACAAGAGGACACAGUAGAAACACACACCACUCUAGGUGUGCAGAUAACUUAAACCC
..(((((((((((.(....((......((((((((....)))))))).......(....)....))...).)))))))).((((((......)))))).......)))...... ( -29.80)
>DroSec_CAF1 662 96 - 1
CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUA-----GAAAGAGGAAACU----------GUGUA---UUACACCACCCUAGGUGUGCAGAUAACUUAAAACC
.....((((((((.((...))))))))))........(((((.-----...(.((....))----------.)...---.((((((......))))))......)))))..... ( -22.70)
>DroSim_CAF1 659 96 - 1
CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUA-----UAAAGAGGAAACU----------GUGUA---UUACACCACCGUAGGUGUGCAGAUAACUUAAAACC
..(((((((((((.((...))))))))))..((((.((.((((-----((...((....))----------.))))---))(((((......))))))).)))).)))...... ( -23.60)
>consensus
CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUA_____GAAAGAGGAAACU__________GUGUA___UUACACCACCCUAGGUGUGCAGAUAACUUAAAACC
.....((((((((.((...))))))))))........(((((............(....)....................((((((......))))))......)))))..... (-22.09 = -21.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:40 2006