Locus 5584

Sequence ID 2R_DroMel_CAF1
Location 17,855,991 – 17,856,111
Length 120
Max. P 0.995256
window8941

overview

Window 1

Location 17,855,991 – 17,856,111
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.75
Mean single sequence MFE -58.62
Consensus MFE -48.30
Energy contribution -49.38
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -2.54
Structure conservation index 0.82
SVM decision value 2.56
SVM RNA-class probability 0.995256
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17855991 120 - 20766785
CUUGUGCUCACCCAGCCGAUUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCAUGGGGGCGGGUCGGAAAUGGGCGAUACUUGCGAUGCAGUCCACUGGGGGGAUCACUCCGCACAGG
(((((((...(((((..(((((((((((.....(((((..((((..((((((.....))))))..).)))...)))))......)))))))))))..))))).(((....)))))))))) ( -62.30)
>DroSec_CAF1 23108 120 - 1
CUUUUGCUCACCCAGCCGAUUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGACGUGUCGGAAAUGGGCGGUACUGGCGGUGCAGUCCACUGGGGGGAUAACUCUGCACAGG
(((.(((...(((((..((((((..((((...((((((..(((.(((((((((....)))).))))))))...))))))....))))..))))))..)))))(((....))).))).))) ( -58.00)
>DroSim_CAF1 23814 120 - 1
CUUUUGCUCACCCAGCCGAUUGCGGCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGACGUGUCGGAAAUGGGCGGUACUUGCGGUGCAGUCCACUGGGGGGAUCACUCUGCACAGG
(((.(((...(((((..(((((((.(((....((((((..(((.(((((((((....)))).))))))))...)))))).....))).)))))))..)))))(((....))).))).))) ( -57.10)
>DroEre_CAF1 25854 120 - 1
CUUUUGCUCGCCCAGCCAGCUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGCGGGCGUGGCGGAGGUGGGCGGUACUUGCGGUGCAGUCCACUGGGAGGCGCACUCCGCACAGG
.....(((..(((((...(((((..(((.(((((((((((.((..(((((((....).)))))))).))))))))).)).....)))..)))))...))))).)))((.....))..... ( -58.80)
>DroYak_CAF1 23438 120 - 1
CUUUUGCUCACCCAGCCAACUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGGCGUGGCGCAAGUGGGCGGUACUUGCGGUGCAGUCCACUGGGAGGGGCACUCCUCACAGG
....(((((.(((((...(((((..(((....((((((.......(((((((.....))))))).((....)))))))).....)))..)))))...)))))..)))))........... ( -56.90)
>consensus
CUUUUGCUCACCCAGCCGAUUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGGCGUGUCGGAAAUGGGCGGUACUUGCGGUGCAGUCCACUGGGGGGAUCACUCCGCACAGG
(((.(((...(((((..(((((((((((....((((((..(((.(((((((((....)))).))))))))...)))))).....)))))))))))..))))).(((....)))))).))) (-48.30 = -49.38 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:09 2006