| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,840,363 – 17,840,453 |
| Length | 90 |
| Max. P | 0.874744 |
| Location | 17,840,363 – 17,840,453 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -13.79 |
| Energy contribution | -15.81 |
| Covariance contribution | 2.02 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17840363 90 - 20766785 UUGAAUCGCAGUCACAUCUUACUGUGGGACCCGUAAUUAAAAACGA--AUGGGUUUUUGAACGAUUGCGAAUCGAAAAUAUA---UUU-CUAUCUA---- ((((.(((((((((((......)))(((((((((............--))))))))).....)))))))).)))).......---...-.......---- ( -23.00) >DroSec_CAF1 7547 90 - 1 UUGAAUCGCAGUCACAUCUUACUGUGAGACCCGUAAUUAAAAACGA--AUGGGUUUUCGGACGAUUGCGAAUCGAAAAUAUA---UUU-CUAUAUA---- ((((.(((((((((((......)))(((((((((............--))))))))).....)))))))).)))).......---...-.......---- ( -23.90) >DroSim_CAF1 7555 90 - 1 UUGAAUCGCAGUCACAUCUUACUGUGGGACCCGUAAUUAAAAACGA--AUGGGUUUUCGAACGAUUGCGAAUCGAAAAUAUA---UUU-CUAUAUA---- ((((.(((((((((((......)))(((((((((............--))))))))).....)))))))).)))).......---...-.......---- ( -23.00) >DroEre_CAF1 7574 86 - 1 UUGAAUCGCAGUCACAUCUUGCUGUGGGAGCUGUAAUUAAAAAUGA--AUUGGUUUCCGAACGAUAGCGAAUCGA--AUUUA---UUU-CUAUC------ ((((.((((.((((((......)))((((((((.............--..))))))))....))).)))).))))--.....---...-.....------ ( -18.56) >DroYak_CAF1 7629 86 - 1 UCGAAUCGCAAUCACAUCUUACUGUGGGACCCGUAAUUAAAAAUUA--AUGGGUUUUCGAACGAUUGCGAAUCGC--AUUUA---UUU-CUAUC------ .(((.(((((((((((......)))((((((((((((.....))).--))))))))).....)))))))).))).--.....---...-.....------ ( -23.30) >DroAna_CAF1 8021 94 - 1 UCGAAUCGCAGUCACACAUUUCAGUU-----UCCAAUUAAAAACGAUAAUU-GCUUUCGAACGACAAAGCUUUGAACAUAGAAUAUUUAUUAUAUAGAGU (((((..(((((........((.(((-----(........))))))..)))-)).)))))........((((((...(((((...)))))....)))))) ( -8.10) >consensus UUGAAUCGCAGUCACAUCUUACUGUGGGACCCGUAAUUAAAAACGA__AUGGGUUUUCGAACGAUUGCGAAUCGAAAAUAUA___UUU_CUAUAUA____ ((((.(((((((((((......)))(((((((((..............))))))))).....)))))))).))))......................... (-13.79 = -15.81 + 2.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:02 2006