| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,831,951 – 17,832,054 |
| Length | 103 |
| Max. P | 0.776528 |
| Location | 17,831,951 – 17,832,054 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.33 |
| Mean single sequence MFE | -35.67 |
| Consensus MFE | -20.64 |
| Energy contribution | -21.03 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17831951 103 + 20766785 AGAG------CGUCGAGUUUU-CAGUCUGGUUUUGAGAAUUUCUUAGAAUCAGCGAGCUGGCAAACGAGUUCAUAAUCG----------GCGUCAAGAAACGCUCAGUGGGGAUUCCCUC .(((------((((((.....-..(.(((((((((((.....))))))))))))(((((.(....).)))))....)))----------))((......))))))...(((....))).. ( -34.80) >DroPse_CAF1 110873 112 + 1 AGAGUUCAUGUGUCGCUUGAU-C-GGCCGGUUCUG--GAUUUCUGGGAACAAGAUAUCUGGAAAACGAGUUCUAAAUUGCUCUAAGGUGGGGUGCAGAGGAGC----UGGGGAUCCCCUG ..(((((.(.((.(((((.((-(-......(((..--(((.((((....).))).)))..)))...((((........))))...))).))))))).).))))----)(((....))).. ( -36.20) >DroSec_CAF1 99940 103 + 1 ACAG------CGUCGAGUUUU-CAGUCUGGUUUUGAGAAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUCUUAAUUG----------GCGUCAAGAAACGCUCCGUGGGGAUUCCCCC ....------......(((((-(((((((((((((((.....)))))))))))...))))).))))(((((((((...(----------((((......)))))...))))))))).... ( -35.80) >DroSim_CAF1 99265 103 + 1 ACAG------CGUCGAGUUUU-CAGUCUGGUUUUGAGAAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUCUUAAUUG----------GCGUCAAGAAACGCUCCGUGGGGAUUCCCCC ....------......(((((-(((((((((((((((.....)))))))))))...))))).))))(((((((((...(----------((((......)))))...))))))))).... ( -35.80) >DroEre_CAF1 100460 103 + 1 AGAG------CGUCAAGUUUU-UAGUCUGGUUUUGAGGAUUUCUCAGAACCAGCGAGCGAGCAAACGAGUUAUUAAUUG----------GCGUCAAGAAACGCGCCGUGGGGAUUCCCCG ((((------(.....)))))-..(.(((((((((((.....))))))))))))..(((.((...(((........)))----------((((......)))))))))((((...)))). ( -33.50) >DroYak_CAF1 104423 104 + 1 AGAG------CGUCGGGUUUUCUGGUCUGGUUUUGAGGAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUAUUAAUUG----------GCGUCAAGAAACGCUCAGUGGGGAUUCCCCG .(((------(((...((((.(..(((((((((((((.....)))))))))))...))..).))))((((((.....))----------)).)).....))))))...((((...)))). ( -37.90) >consensus AGAG______CGUCGAGUUUU_CAGUCUGGUUUUGAGAAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUCUUAAUUG__________GCGUCAAGAAACGCUCCGUGGGGAUUCCCCC ................((((..(((((((((((((((.....)))))))))))...))))..)))).......................((((......)))).....((((...)))). (-20.64 = -21.03 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:00 2006