Locus 556

Sequence ID 2R_DroMel_CAF1
Location 2,901,231 – 2,901,341
Length 110
Max. P 0.616471
window1029

overview

Window 9

Location 2,901,231 – 2,901,341
Length 110
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -29.72
Consensus MFE -22.42
Energy contribution -22.48
Covariance contribution 0.06
Combinations/Pair 1.32
Mean z-score -1.28
Structure conservation index 0.75
SVM decision value 0.17
SVM RNA-class probability 0.616471
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2901231 110 + 20766785
UCCAUUGGAUCCGCAGCUGGCCAAAAUGCUGAUUGCCAGCUGCCAACAUAACUGCUCUAAUGAAAUACUUUCCAUAACGGCCAUGUUGUCGGGUGAGAUAAAACACAAAU----
..(((((((...(((((((((.............)))))))))...((....)).))))))).....((((((((((((....)))))).))).))).............---- ( -28.32)
>DroGri_CAF1 2994 114 + 1
UCCACUGGAUCCACAAUUGGCCAAAAUGCUGAUAGCCAGCUGUCAGCACAACUGCUCCAAUGAGAUACUCUCAAUAACGGCUAUGCUGUCGGGUGAGGCACUAACUAAAUGCGC
..((((.(((...((..(((((....(((((((((....)))))))))............((((.....)))).....)))))))..))).))))..(((.........))).. ( -33.40)
>DroWil_CAF1 3090 109 + 1
CCCGUUGGAUCCACAAUUGGCCAAAAUGCUGAUAGCCAGUUGCCAGCAUAAUUGCUCCAAUGAGAUACUAUCCAUAACGGCCAUGUUGUCGGGUGAGAUAUA-UAUAUAU----
...(((..((((((((((((((...((((((.(((....))).)))))).....(((....)))..............))))).))))).))))..)))...-.......---- ( -28.20)
>DroMoj_CAF1 2971 110 + 1
UCCGCUCGAUCCGCAAUUGGCUAAGAUGCUGAUAGCCAGCUGCCAGCACAAUUGCUCCAAUGAGAUACUUUCAAUUACGGCCAUGCUGUCGGGUGAGAAACAAACUAAAC----
(((((((((...((.((..((......))..)).))((((.(((((((....))))....(((((...))))).....)))...))))))))))).))............---- ( -31.70)
>DroAna_CAF1 2860 110 + 1
UCCCUUGGAUCCCCAGCUGGCCAAGAUGCUGAUAGCCAGUUGUCAGCACAAUUGUUCCAACGAAAUCCUUUCUAUUACGGCGAUGCUGUCGGGUGAGAUGAAAUAAAAAA----
...(((..((((.(((((.(((....(((((((((....)))))))))...((((....))))...............))).).))))..))))))).............---- ( -27.80)
>DroPer_CAF1 4997 110 + 1
CCCCCUGGAUCCGCAGCUCGCCAAGAUGCUGAUAGCCAGCUGCCAGCACAACUGCUCCAACGAGAUACUUUCCAUAACGGCCAUGCUGUCGGGUGAGAAAAACUAGCAAC----
....(((((((((((((..(((....(((((.(((....))).)))))......(((....)))..............)))...)))).)))))........))))....---- ( -28.90)
>consensus
UCCACUGGAUCCGCAACUGGCCAAAAUGCUGAUAGCCAGCUGCCAGCACAACUGCUCCAAUGAGAUACUUUCCAUAACGGCCAUGCUGUCGGGUGAGAUAAAAUAUAAAU____
........((((((((((((((....(((((.(((....))).)))))......(((....)))..............))))).))))).)))).................... (-22.42 = -22.48 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:37 2006