| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,750,808 – 17,750,912 |
| Length | 104 |
| Max. P | 0.992377 |
| Location | 17,750,808 – 17,750,912 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.54 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -17.36 |
| Energy contribution | -16.12 |
| Covariance contribution | -1.25 |
| Combinations/Pair | 1.37 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.56 |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.992377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17750808 104 - 20766785 AAAGCGUAGUAGAAAUACUGCGAAAUUUCGUUCUGGUUAGCGAGGCAAACAAACAGCUCUGCGUGUGUGCGUCAGUGAGUGACCAAAACAAAGCACACGCACAG ..(((((((((....))))))....(((((((......)))))))..........)))(((.((((((((((((.....)))).........)))))))).))) ( -32.30) >DroPse_CAF1 20705 102 - 1 AAAAGGUAGUAGAAAUACUACUAAAUUGUGUCU--UUCAUUCGCUCAAACAAGCUGUCUUGCCUGUGUGCGUUUGUGUGUGACCAAAACAAAACACACACACAU ....(((((((....)))))))....(((((..--......(((....(((.((......)).)))..)))...((((((............))))))))))). ( -28.40) >DroEre_CAF1 19599 104 - 1 AAAGCGUAGUAGAAAUACUGCGAAAUUCCAUUCCGGUGAGCGAGGCAAACAAACAGCUUUGCGUGUGUGCGUUAGUGAGUGACCAAAACAAAGCACACGCACAG ....(((((((....))))))).................(((((((.........)))))))((((((((.....((......)).......)))))))).... ( -33.40) >DroYak_CAF1 20547 104 - 1 AAAGCGCAGUAGAAAUACUGCGAAAUUCCAUUCCAGUGAGUGAGGCAAACAAUCAGCGUUGCGUGUGUGCGUUAGUGAGUGACCAAAACAAAGCACACGCACAG ...((((((((....)))))).......(((((....))))).............))((.((((((((..(((..((......)).)))...)))))))))).. ( -32.00) >DroAna_CAF1 18852 102 - 1 AAAUAGUAGUAGAAAUACUACGAAAUUCCUUGUUGGUGAGUGAGCUAAGCAUACCGCUCUCCCGUUAUGCGU--GUGUGUGACCAAAACAAAGCACACAUACUU .....((((((....))))))...........(((((......)))))(((((.((......)).)))))((--(((((((............))))))))).. ( -28.70) >DroPer_CAF1 20732 102 - 1 AAAAGGUAGUAGAAAUACUACUAAAUUGUGUCU--UUCAUUCGCUCAAACAAGCUGUCUUGCCUGAGUGCGUUUGUGUGUGACCAAAACAAAACACACACACAU ....(((((((....)))))))....(((((..--......((((((..((((....))))..)))))).....((((((............))))))))))). ( -29.90) >consensus AAAGCGUAGUAGAAAUACUACGAAAUUCCGUUC_GGUGAGUGAGGCAAACAAACAGCUUUGCCUGUGUGCGUUAGUGAGUGACCAAAACAAAGCACACACACAG ....(((((((....))))))).........................................((((((.((..((..((.......))...)))).)))))). (-17.36 = -16.12 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:39 2006