Locus 5553

Sequence ID 2R_DroMel_CAF1
Location 17,724,303 – 17,724,415
Length 112
Max. P 0.996101
window8904

overview

Window 4

Location 17,724,303 – 17,724,415
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 96.62
Mean single sequence MFE -19.96
Consensus MFE -18.06
Energy contribution -18.46
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.90
SVM decision value 2.65
SVM RNA-class probability 0.996101
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17724303 112 + 20766785
ACGUUAACGAUAUACAGUAUCUAUAGCUAAAGCCCUAGCGAUACCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU-AACUGACAAACC
.((....)).....((((...((((((....((....))..(((((....)))))))))))...........................((((....).))-)))))....... ( -16.30)
>DroSec_CAF1 3264 112 + 1
ACGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU-AACUGACAAACC
..((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).))))...-...))))..... ( -20.44)
>DroSim_CAF1 3359 112 + 1
ACGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU-AACUGACAAACC
..((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).))))...-...))))..... ( -20.44)
>DroEre_CAF1 4340 112 + 1
AUGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCCAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAAUUAAAUUUAAAUCUAGCAACUGACU-AACUGACAAACC
.(((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).))))...-...))))).... ( -20.24)
>DroYak_CAF1 3427 113 + 1
AUGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGUUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAAUUAAAUUUAAAUCUAGCAACUGACUUAACUGACAAACC
.(((((........((((.((((..(((((.((....)).)))))......((((....)))).........................)))).)))).......))))).... ( -22.36)
>consensus
ACGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU_AACUGACAAACC
..((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).)))).......))))..... (-18.06 = -18.46 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:32 2006