| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,712,361 – 17,712,481 |
| Length | 120 |
| Max. P | 0.520766 |
| Location | 17,712,361 – 17,712,481 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.94 |
| Mean single sequence MFE | -50.05 |
| Consensus MFE | -30.38 |
| Energy contribution | -30.72 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17712361 120 + 20766785 UGGCGUGGGUCAGAGUGGUGGUGGUCACAAUGCCAGUGGCCUUUCCAGCAGCCUGGGCCCAGGCUGCGAUGGAGUCCACCUGAUUGGCCGGAUCCUCGCUGCCGCUGCAGUUGUUGAAGC .((((((((((((...(((((.((((((.......)))))).(((((((((((((....))))))))..))))).)))))...))))))(....).))).)))(((.(((...))).))) ( -54.00) >DroGri_CAF1 24353 120 + 1 UGGCAUGGGUCAAAGUAGUCGUUGUCACAAUGCCCGUGGCCUUGCCCGCCGCCUGCGCCCAGGUGGCAAUGGAGCUGACCUGAUUGGCGGGAUCCAUGCUGCCGCUGCAGUUGUUAAAGU .((((((((((...(((((((..((((....(((((((((...))).((((((((....)))))))).)))).)))))).))))).))..))))))))))((....))............ ( -47.00) >DroWil_CAF1 35602 120 + 1 UGGCAUGGGUCAGGGUGGUGGUGGUCACGAAGCCAGUGGAUUUGCCCUGAGCCUGAGACCAGGCGGCUAUAGAGCUAACAUGAUUGGCAGGAUCCUCACUGCCGCUGCAAUUGUUAAAUG (((((...(.(((((..((((((((......))))..(((((((((....(((((....)))))((((....)))).........)))).)))))))))..)).))))...))))).... ( -44.00) >DroMoj_CAF1 25670 120 + 1 UGGCAUGGGUCAGAGUUGUCGUUGUCACGAUUCCACUGCCCUUGCCCGCUGCCUGAGCCCAGGCGGCAAUGGAGCUCACUUGAUUGGCGGGAUCCUCACUGCCGCUGCAAUUGUUGAAGU .((((.(((.(((.(..(((((....)))))..).)))))).)))).((((((((....))))))))..((.(((((....))..(((((........)))))))).))........... ( -50.70) >DroAna_CAF1 18842 120 + 1 UGGCAUGGGUGAGGGUGGUGGUGGUGACAAUGCCACUACCUUUGCCAGCAGCCUGGGCCCAGGUGGCAAUAGAUGGGAUUUGGUUGGCGGGAUCCUCGCUGCCACUGCAGUUGUUGAAAU .((((..((..((((((((((((....)...)))))))))))..)).((((((((....))))(((((...((..((((((.(....).))))))))..)))))))))...))))..... ( -53.50) >DroPer_CAF1 19683 120 + 1 UGGCGUGGGUCAGGGUGGUGGUGGUCACAAUGCCGCUUCCCUUUCCGGCCGCCUGGGCCCAGGCGGCAAUGGAACUAAUCUGAUUGGCUGGAUCCUCGCUGCCGCUGCAGUUGUUAAAGU .((((.(((((((((.(((((((.......))))))).))))((((.((((((((....))))))))...))))................))))).))))((....))............ ( -51.10) >consensus UGGCAUGGGUCAGAGUGGUGGUGGUCACAAUGCCACUGCCCUUGCCCGCAGCCUGGGCCCAGGCGGCAAUGGAGCUAACCUGAUUGGCGGGAUCCUCGCUGCCGCUGCAGUUGUUAAAGU (((((...((...((((((((((((......)))......((((((.((((((((....))))))))...((......)).....))))))......)))))))))))...))))).... (-30.38 = -30.72 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:28 2006