Locus 550

Sequence ID 2R_DroMel_CAF1
Location 2,870,075 – 2,870,165
Length 90
Max. P 0.700468
window1022

overview

Window 2

Location 2,870,075 – 2,870,165
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -28.42
Consensus MFE -20.98
Energy contribution -21.18
Covariance contribution 0.20
Combinations/Pair 1.32
Mean z-score -1.50
Structure conservation index 0.74
SVM decision value 0.35
SVM RNA-class probability 0.700468
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2870075 90 + 20766785
UUUGGUGCCCACAGACACCUCCAUUGUUCGAACUCUUUCCAAGAGAUUCAGCUUUGGAGGAACCGAAGCUACGGGCUCUGAGCGAAACAU----
((..(.((((.......((((((..(((.(((((((.....)))).))))))..))))))....(......))))).)..))........---- ( -28.60)
>DroGri_CAF1 23353 92 + 1
UUCGGUGCCCAAAGGAACUUCCAUAGUGCGCACUCUCUCGAGCAGGUUCAGUUUGGGUGGCACAGAGGCAACGGGCUCUAAAUGGGAUUAA--A
...((.((((...((.....))...((((.(((((.((.(((....)))))...)))))))))...(....))))).))............--. ( -27.80)
>DroSec_CAF1 21639 94 + 1
CUUCGUGCCCAAAGACACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGGGGAACCGAAGCAACGGGCUCUGAGCGAAACAUUUGC
.(((((((((.......((((((..((..(((((((.....)))).))).))..))))))....(......))))).....)))))........ ( -26.80)
>DroSim_CAF1 28535 94 + 1
CUUGGUGCCCAAAGACACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGAGGAACCGAAGCAACAGGCUCUGAGCGAAACAUAUGC
((..(.(((........((((((..((..(((((((.....)))).))).))..))))))....(......).))).)..))............ ( -25.60)
>DroEre_CAF1 20945 94 + 1
CUUGGUGCCCAAGGAAACCUCCAUUGUGCGGACUCUUUCCAGGAGAUUCAACUUUGGAGGAACUGAAGCCACGGGCUCUGAGCGAAAGACAAGU
((..(.((((..((...((((((..((..(((((((.....)))).))).))..))))))........))..)))).)..))(....)...... ( -31.60)
>DroYak_CAF1 22700 94 + 1
CGUGGUGGCCAAAGAAACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGAGGAACCGAAGCAACGGGCUCUGGGCGAAUCAAAAGC
..((((.(((..(((..((((((..((..(((((((.....)))).))).))..))))))..(((......)))..))).)))..))))..... ( -30.10)
>consensus
CUUGGUGCCCAAAGAAACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGAGGAACCGAAGCAACGGGCUCUGAGCGAAACAUA_GC
(((((.((((.......((((((..((..(((((((.....)))).))).))..))))))....(......))))).)))))............ (-20.98 = -21.18 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:30 2006