| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,309,994 – 1,310,091 |
| Length | 97 |
| Max. P | 0.997967 |
| Location | 1,309,994 – 1,310,091 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 73.88 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -16.99 |
| Energy contribution | -18.10 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.76 |
| SVM decision value | 2.97 |
| SVM RNA-class probability | 0.997967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1309994 97 - 20766785 CUUUUGAGGGGGUUGUUGGGGGUAGAGGGGAUAAAUAGCUUUUGGAACCAACACCACCAGUGGUAAGACUCACUUGCAAAAGAUUUACGGAAUCGAG (((((((((((((((((((...((((((..........))))))...)))))((((....))))..))))).))).))))))............... ( -24.90) >DroSec_CAF1 28411 73 - 1 CUUU-AAAGGGGGUGUUGAAGGUAGAGGGGAUAAAUACCAUUUGGAAGCAGCACCACCAGUGGUAA-----------------------GAAUCGAG (((.-.(..(((((((((....((((.((........)).))))....))))))).))..)...))-----------------------)....... ( -18.00) >DroSim_CAF1 7364 74 - 1 CUUUUGAGGGGGGUGUUGGAGGUAGAGGGGAUAAAUACCUUUUGGAACCAGCACCACCAGUGGUAG-----------------------GAAUCAAG .......((..((((((((...(((((((........)))))))...)))))))).))..((((..-----------------------..)))).. ( -24.30) >consensus CUUUUGAGGGGGGUGUUGGAGGUAGAGGGGAUAAAUACCUUUUGGAACCAGCACCACCAGUGGUAA_______________________GAAUCGAG ........((.((((((((...(((((((........)))))))...)))))))).))....................................... (-16.99 = -18.10 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:59 2006