| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,867,475 – 2,867,578 |
| Length | 103 |
| Max. P | 0.649678 |
| Location | 2,867,475 – 2,867,578 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 84.64 |
| Mean single sequence MFE | -39.28 |
| Consensus MFE | -29.58 |
| Energy contribution | -29.87 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2867475 103 + 20766785 GCACAAUUUGUCAUUA----------UAUGUACCUAUAGAAGGGCACGGGGUAGGCCUGAGCAGGACAGAAGAUGGCUAUUGUCCUGUCCUGGCGGAUGCUGUCGUGACUGAA .........(((((..----------......(((.....)))(.((((.((..(((.(..((((((((.((....)).))))))))..).)))..)).)))))))))).... ( -33.60) >DroSec_CAF1 19065 110 + 1 GCACAAUUUGACAGCA---ACAAGUCACUAUACCUAUAGAAGGGCACGGGGUAGGCCUGGGCAGGACAGAAAAUGGCUAUUGUCCUGUCCUGGCGGAUGCUGUCGUGACUGAA ................---...((((((....(((.....)))(.((((.((..(((.(((((((((((.(......).))))))))))).)))..)).)))))))))))... ( -40.00) >DroSim_CAF1 25951 110 + 1 GCACAAUUUGACGGCA---ACAAGUCACUAUACCUAUAGAAGGGCACGGGGUAGGCCUGGGCAGGACAGAAAAUGGCUAUUGUCCUGUCCUGGCGGAUGCUGUCGUGACUGAA ............(...---.).((((((....(((.....)))(.((((.((..(((.(((((((((((.(......).))))))))))).)))..)).)))))))))))... ( -41.30) >DroEre_CAF1 18411 105 + 1 GCACAGUUGGCCAGCA---ACAAGU-----UACCUAUAGAAGGGCACGGGGUAGGCCUGGGCAGGACAGAAAAUGGCUAUUGUCCUGCCCUGGCGGAUGCUGUCGUGACUGAA ...(((((((.(((((---.(...(-----(((((...(.....)...))))))(((.(((((((((((.(......).))))))))))).))).).))))).).)))))).. ( -42.90) >DroYak_CAF1 20264 105 + 1 GCACAAUUUGACAGCA---ACAAGU-----UACCUAUAGAGGGGCACCGGGUAGGCCUGGGCAGGACAGAAAAUGGCUAUUGUCCUGCCCCGGCGGAUGCUGUCGUGACUGAA .........(((((((---.(....-----...((((...((....))..))))(((.(((((((((((.(......).))))))))))).))).).)))))))......... ( -43.90) >DroAna_CAF1 17660 107 + 1 U-UCAAUUGGCUUGCUUGGGUGUGU-----UACCUAUAGAAUGGCACGGGGUAGGCCUGGGCAGGACAGAAAAUGGCUAUUGUUUGCCCCUGCCGGAUACUGUCGUGGCUGAA .-....(..(((.((.((((((...-----)))))).....(((((.(((((((((.(((.((..........)).)))..))))))))))))))......))...)))..). ( -34.00) >consensus GCACAAUUUGACAGCA___ACAAGU_____UACCUAUAGAAGGGCACGGGGUAGGCCUGGGCAGGACAGAAAAUGGCUAUUGUCCUGCCCUGGCGGAUGCUGUCGUGACUGAA ...........(((..................(((.....))).(((((((((.(((.(((((((((((.(......).))))))))))).)))...)))).))))).))).. (-29.58 = -29.87 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:29 2006