Locus 5487

Sequence ID 2R_DroMel_CAF1
Location 17,648,368 – 17,648,488
Length 120
Max. P 0.960530
window8753

overview

Window 3

Location 17,648,368 – 17,648,488
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -47.60
Consensus MFE -41.30
Energy contribution -41.86
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.71
Structure conservation index 0.87
SVM decision value 1.51
SVM RNA-class probability 0.960530
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17648368 120 - 20766785
CUCGGCGGCCAGGCGCUGUAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAAAUCCACCUCCCUCUCCAUGGCCUCUUUGGCACGGCGUCGACGUAUGCC
...(((((((((((((((.((((.....)))))))))))))....))))))....(((((((((((..(((((....((...........))....)))))..))))).))))))..... ( -46.20)
>DroSec_CAF1 2045 120 - 1
CUCGGCGGCCAGGCGCUGCAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAGAUCCACCUCCCUCUCCAUGGCCUCCUUGGCCCGGCGGCGACGUAUGCU
...(((((((((((((((.((((.....)))))))))))))....))))))...((((.((((((((....((......)).........((((.....))))..)))))).)))))).. ( -48.40)
>DroSim_CAF1 7961 120 - 1
CUCGGCGGCCAGGCGCUGCAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAGAUCCACCUCCCUCUCCAUGGCCGCCUUGGCCCGGCGGCGACGUAUGCU
...(((((((((((((((.((((.....)))))))))))))....))))))....(((((((...))........................((((((.......)))))))))))..... ( -48.00)
>DroEre_CAF1 2079 120 - 1
CUCCGCGGCCAGGUGCUGCAGCUCAUCCAGCUCGGCGUCUGUGAUGCCGCCGUCCAUGUCGCGCUGCAUCAGGUCCACCUCCCUCUCCAUGGCCUCCUUGGCCCGCCGGCGCCGCAUGCU
....((((((((..((((.((((.....))))))))..)))....)))))....(((((.(((((((...(((....)))..........((((.....)))).).)))))).))))).. ( -50.10)
>DroYak_CAF1 13252 120 - 1
CUCGGCGGCCAGGUGCUGCAGCUCAUCCAACUCGGCGUCUGUGAUGCCGCCGUCCAUGUCGCGCUGCAUCAGGUCCACCUCCCUCUCCAUGGCCUCCUUGGCUCGGCGACGCCGUAUGCC
...((.((((((((((.((.((.(((......(((((((...)))))))......)))..)))).)))))(((....))).........))))).))..(((.((((...))))...))) ( -45.30)
>consensus
CUCGGCGGCCAGGCGCUGCAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAGAUCCACCUCCCUCUCCAUGGCCUCCUUGGCCCGGCGGCGACGUAUGCU
...(((((((((((((((.((((.....)))))))))))))....))))))...((((.((((((((...((......))..........((((.....))))..)))))).)))))).. (-41.30 = -41.86 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:05 2006