Locus 5481

Sequence ID 2R_DroMel_CAF1
Location 17,636,296 – 17,636,395
Length 99
Max. P 0.819749
window8742

overview

Window 2

Location 17,636,296 – 17,636,395
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.45
Mean single sequence MFE -30.92
Consensus MFE -17.46
Energy contribution -18.08
Covariance contribution 0.62
Combinations/Pair 1.46
Mean z-score -2.00
Structure conservation index 0.56
SVM decision value 0.68
SVM RNA-class probability 0.819749
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17636296 99 - 20766785
AGUGGAACGAUAUGGAGCUGAGAUUAGCCGGCAUGCUUGCAUUUUCCGCCUGGAUAUUCAGAUGGCUUAGCAGUUUUUCCGUCUUCGUUUCCUCCUUCA
((.(((((((.(((((((((.....((((((((....))).........((((....)))).)))))...))))...)))))..)))))))))...... ( -28.60)
>DroVir_CAF1 1275 99 - 1
AGUUAAACUCAAUCUCGCUGAGAUUGCCAGGCAGGCUGCUGUUCUGCGCCUGGUAAAUGAGUGCACCCAGCAAUCGCUCUUCGUCCGAUUGCUGCCGCU
......(((((.((((...))))(((((((((..((.........))))))))))).)))))((...(((((((((.........)))))))))..)). ( -35.40)
>DroSec_CAF1 281 99 - 1
AGUGGAACGAUAUGGAGCUGAGAUUAGCCGGCAUGCUGGCAUUUUCCGCCUGGAUAUUCAGUUGGCUUAGCAGUUUUUCCGUUUUCGUUUCCUCCUUCA
((.(((((((.(((((((((((....(((((....))))).....(((.((((....)))).)))))))))......)))))..)))))))))...... ( -32.80)
>DroSim_CAF1 245 99 - 1
AGUGGAACGAUAUGGAGCUGAGAUUAGCCGGCAUGCUGGCAUUUUCCGCCUGAAUAUUCAGUUGGCUUAGCAGUUUUUCCGUUUUCGUUUCCUCCUUCA
((.(((((((.(((((((((((....(((((....))))).....(((.((((....)))).)))))))))......)))))..)))))))))...... ( -33.70)
>DroEre_CAF1 232 99 - 1
AAUGGAACAAUAUGGAGCUGAGAUUAGCUGGCAAGCUAGCAUUUUCUGCCUGGAUGUUUAGUUGGUUGAGCAGCUUUUCAAUUUUUGUUUCCUCCUUCU
...(((((((...(((((((.((((((((((((..((((((.....)).)))).)).))))))))))...))))))).......)))))))........ ( -26.40)
>DroYak_CAF1 230 99 - 1
AAUGGAACAGUAUGGAACUGAGAUUAGCCGGCAAGCUGGCAUUCUCCGCCUGGAUGUUCAGUUGGUUUAGCAGUUUCUCAGUUUUCGUUUCCUCCUUCU
...(((.....((((((((((((...(((((....))))).....(((.((((....)))).)))..........)))))).))))))....))).... ( -28.60)
>consensus
AGUGGAACGAUAUGGAGCUGAGAUUAGCCGGCAUGCUGGCAUUUUCCGCCUGGAUAUUCAGUUGGCUUAGCAGUUUUUCCGUUUUCGUUUCCUCCUUCA
...(((((((...(((((((......(((((....))))).....(((.((((....)))).))).....))))))).......)))))))........ (-17.46 = -18.08 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:54 2006