| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,630,583 – 17,630,679 |
| Length | 96 |
| Max. P | 0.589343 |
| Location | 17,630,583 – 17,630,679 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 87.78 |
| Mean single sequence MFE | -30.73 |
| Consensus MFE | -24.65 |
| Energy contribution | -24.60 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17630583 96 + 20766785 GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAAGUGCAGAAGCAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((..((...((((((((.......))))))))..))..)).......)))...... ( -31.90) >DroSec_CAF1 19708 96 + 1 GAUCCAAAGUGGAGCACCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAAAAACAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((.....)))((.((.((((...((((.....)))).((..((...((((((((.......))))))))..))..))..)))).))..))... ( -30.80) >DroSim_CAF1 19808 96 + 1 GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAAAAGCAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((..((...((((((((.......))))))))..))..)).......)))...... ( -31.60) >DroEre_CAF1 19676 96 + 1 GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUCAUGGACCAGGUGCAGAAGCAGCGCCUGGAGAUUGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((.((....((((((((.......))))))))....)))).......)))...... ( -34.40) >DroYak_CAF1 19513 96 + 1 GAUCCAAGGUAGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAGAAGCAGCGCCUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((..((...((((((((.......))))))))..))..)).......)))...... ( -35.40) >DroPer_CAF1 26823 96 + 1 GUACAAACAUAGAGCAGCAAUACAAAAUAUUGAAUGCUGAACUGAUGGACCACGUACAGAAACUACGUGUGGAGUUGGGGGAGUACAAAAAGCUGG ((((..........(((((...(((....)))..)))))..(..((...(((((((.......)))))).)..))..)....)))).......... ( -20.30) >consensus GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAGAAGCAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ...((.........(((((((....)))))))..(((...(((.((...((((((((.......))))))))..)).)))..)))........)). (-24.65 = -24.60 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:49 2006