Locus 5474

Sequence ID 2R_DroMel_CAF1
Location 17,616,763 – 17,616,866
Length 103
Max. P 0.780440
window8734

overview

Window 4

Location 17,616,763 – 17,616,866
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 97.41
Mean single sequence MFE -28.03
Consensus MFE -27.14
Energy contribution -27.03
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.79
Structure conservation index 0.97
SVM decision value 0.56
SVM RNA-class probability 0.780440
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17616763 103 + 20766785
AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACGAAGACAGAUAGGGUGAAAAGGGUGGCCCGAGUUCAAGCGAGCAACAAAUGCACUGCGCAAA
.........(((((((.(((..((((.((((...(((....)))...)))).((((.(......).))))...)))).))).(((.....))).))))))).. ( -27.90)
>DroSec_CAF1 5955 103 + 1
AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACAAUGACAGAUAGGGUGAAAAGGGUGGCCCGAGCUCAAGCAAGCAACAAAUGCACUGCGCAAA
.........(((((((((....((((.((((..(((.....)))...)))).((((.(......).))))...)))).))..(((.....))).))))))).. ( -28.10)
>DroSim_CAF1 5951 103 + 1
AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACAAUGACAGAUAGGGUGAAAAGGGUGGCCCGAGCUCAAGCAAGCAACAAAUGCACUGCGCAAA
.........(((((((((....((((.((((..(((.....)))...)))).((((.(......).))))...)))).))..(((.....))).))))))).. ( -28.10)
>consensus
AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACAAUGACAGAUAGGGUGAAAAGGGUGGCCCGAGCUCAAGCAAGCAACAAAUGCACUGCGCAAA
.........(((((((((....((((.((((..(((.....)))...)))).((((.(......).))))...)))).))..(((.....))).))))))).. (-27.14 = -27.03 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:46 2006