Locus 5457

Sequence ID 2R_DroMel_CAF1
Location 17,566,028 – 17,566,128
Length 100
Max. P 0.928754
window8711

overview

Window 1

Location 17,566,028 – 17,566,128
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 77.26
Mean single sequence MFE -18.13
Consensus MFE -10.65
Energy contribution -10.43
Covariance contribution -0.22
Combinations/Pair 1.11
Mean z-score -2.09
Structure conservation index 0.59
SVM decision value 1.19
SVM RNA-class probability 0.928754
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17566028 100 - 20766785
UUCUAUAUAUAUGUAUUAUAUAUGUAUAUAGAGAGCAUUUUUUCCGUAU---UAUUUUUCUGCGGUGACAAACUUGGCAACGAGUCGCA-GUUCCUUUUUAAUU
(((((((((((((((...)))))))))))))))................---.......(((((....)..(((((....))))).)))-)............. ( -26.20)
>DroPse_CAF1 86508 83 - 1
------AUAU------AAAAUA---------AUCCCCUUUUUUCCUUAUUAUUAUUUUUCUGCGGUGACAAACUUGGCAACGAGUUGCGACUUCUUUUUUAAUU
------....------......---------.............................((((....).((((((....)))))))))............... ( -11.80)
>DroSec_CAF1 72520 95 - 1
CUCCAUAUAU----AUUAUAUAUGUAUGUAGAGAGCAUUUUUUCCGUAU---UAUUUUUCUGCGGUGACAAACUUGGCAACGAGUCGCA-GUUC-UUUUUAAUU
...(((((((----((...))))))))).(((((((.......(((((.---........)))))((....(((((....)))))..))-))))-)))...... ( -21.80)
>DroSim_CAF1 62048 96 - 1
CUCUAUAUAU----AUUAUAUAAGUAUGUAGAGAGCAUUUUUUCCGUAU---UAUUUUUCUGCGGUGACAAACUUGGCAACGAGUCGCA-GUUCCUUUUUAAUU
((((((((((----.........))))))))))................---.......(((((....)..(((((....))))).)))-)............. ( -23.00)
>DroEre_CAF1 83256 75 - 1
C---------------UAUAU----------AGAGCAUUUUUUCCGUAU---UAUUUUUCUGCGGUGACAAACUUGGCAACGAGUCGCA-GUUCCUUUUUAAUU
.---------------.(((.----------.(((......)))..)))---.......(((((....)..(((((....))))).)))-)............. ( -14.20)
>DroPer_CAF1 91560 83 - 1
------AUAU------AAAAUA---------AUCCCCUUUUUUCCUUAUUAUUAUUUUUCUGCGGUGACAAACUUGGCAACGAGUUGCGACUUCUUUUUUAAUU
------....------......---------.............................((((....).((((((....)))))))))............... ( -11.80)
>consensus
C_____AUAU______UAUAUA_________AGAGCAUUUUUUCCGUAU___UAUUUUUCUGCGGUGACAAACUUGGCAACGAGUCGCA_GUUCCUUUUUAAUU
............................................................((((....)..(((((....))))).)))............... (-10.65 = -10.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:24 2006