Locus 5453

Sequence ID 2R_DroMel_CAF1
Location 17,554,741 – 17,554,835
Length 94
Max. P 0.701451
window8707

overview

Window 7

Location 17,554,741 – 17,554,835
Length 94
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 77.48
Mean single sequence MFE -20.57
Consensus MFE -13.69
Energy contribution -12.97
Covariance contribution -0.72
Combinations/Pair 1.25
Mean z-score -1.32
Structure conservation index 0.67
SVM decision value 0.35
SVM RNA-class probability 0.701451
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17554741 94 - 20766785
-------------CUAGUUUUCGAA---GGGCAUGCAUUAGUUGCGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUCU
-------------...........(---((((((.((((((((((((((.....)))).))))......((......))...))))))..)))))))............. ( -19.40)
>DroVir_CAF1 85665 104 - 1
GACAUAUAUAUAUGUUAUGUUAGUU---GUGUAUGUAUUAGA-GAGGACAUAAUGUCCUGCAAAUUGUGCACAUUUUUCAAUUUAAUGAGGUGCU-UAUUUUGAA-UUUA
.(((((((((..((......))..)---))))))))......-.(((((.....))))).((((.((.((((....((((......)))))))).-)).))))..-.... ( -20.90)
>DroPse_CAF1 73934 97 - 1
-------------CUAGUUCCUGCAUAGAUGCAUGCAUUAGUCGGGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU
-------------...(((((((.((.((((....)))).)))))))))..((((((.(((.....)))))))))....((((((..(((........)))))))))... ( -22.80)
>DroWil_CAF1 103910 90 - 1
----------------UUUUUGGGAGAGAUGUAUGUAUUAGCCAAGGACAUAAUGUCCUGCAAAUUGUGCACAUUUGUCAAUUUAAUGAGGUGCU-UAUUUUAAAUU---
----------------...((((.(((..((((((.(((.((..(((((.....))))))).)))))))))..))).))))...((((((...))-)))).......--- ( -17.70)
>DroAna_CAF1 63480 93 - 1
-------------CUCCUGCCUGC----AGGCAUGCAUUAGCCAAGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU
-------------...((((.(((----.(((........))).(((((.....))))))))....)))).........((((((..(((........)))))))))... ( -19.80)
>DroPer_CAF1 78922 97 - 1
-------------CUAGUUCCUGCAUAGAUGCAUGCAUUAGUCGGGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU
-------------...(((((((.((.((((....)))).)))))))))..((((((.(((.....)))))))))....((((((..(((........)))))))))... ( -22.80)
>consensus
_____________CUAGUUCCUGCA___AUGCAUGCAUUAGUCGAGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU
..............................((((.((((.((..(((((.....)))))))((((((.(((....)))))))))))))..))))................ (-13.69 = -12.97 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:20 2006