| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,862,852 – 2,862,947 |
| Length | 95 |
| Max. P | 0.975465 |
| Location | 2,862,852 – 2,862,947 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.46 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2862852 95 - 20766785 UAGGG---UUCAAAUAGAAAUUAAUGCCAAAGACAU----AUUACAUUUAUCUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA ..(((---(((.((((((....((((..........----....))))..))))))...))))))((((((((....))))))))................. ( -28.94) >DroSec_CAF1 14485 95 - 1 UAGGG---UUUAAAUAGAAAUGAAUGCCAAAGACAU----AUUACAUUUAUCUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA ..(((---(((.((((((..((((((..........----....))))))))))))...))))))((((((((....))))))))................. ( -29.34) >DroSim_CAF1 21180 95 - 1 UAGGG---UUUAAAUAGAAAUGAAUGCCAAAGACAU----AUUACAUUUAUCUAUUAUAGAGCCCGUUGGAGCGAAAGCUCCCACCUUUUCGAGUGACUCCA ..(((---(((.((((((..((((((..........----....))))))))))))...))))))((.(((((....))))).))................. ( -26.44) >DroEre_CAF1 14058 92 - 1 UAAGG---UU---AUAAAAAUUAAGGCUAAGGACAA----AUGACAUUUAUUUAUUAUAGAGCCCGUUGGAGCGAAAGCUCCGACCUUUUCGAGUGACUCCA ...((---((---((.........((((...((.((----((((...)))))).))....)))).((((((((....))))))))........))))))... ( -27.10) >DroYak_CAF1 16071 96 - 1 UAAGG---UU---AUCUAAAUAAAUGCCAAAGAUACAUAUAUUACGUUUAUUUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA ...((---((---((.((((((((((..................)))))))))).....(((...((((((((....))))))))...)))..))))))... ( -24.47) >DroMoj_CAF1 15294 88 - 1 UAGCCCUAGGC------AAAU--AGUCUAAAUAUGU----AUU--UUACUUUGCUUUUAGAGCCUGUCGGCGCUAAGGCACCAACAUUUUCGAGCGACUCCA ..(((.(((((------..((--((((((((...((----(..--......))).))))))..))))..)).))).)))....................... ( -19.00) >consensus UAGGG___UU___AUAGAAAUGAAUGCCAAAGACAU____AUUACAUUUAUCUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA ...........................................................(((...((((((((....))))))))...)))........... (-14.90 = -15.23 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:24 2006