| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,472,757 – 17,472,859 |
| Length | 102 |
| Max. P | 0.692989 |
| Location | 17,472,757 – 17,472,859 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 92.66 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -21.10 |
| Energy contribution | -20.18 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17472757 102 + 20766785 AAGCGAAAUACAUUUUUCUACA----UAUCUUCCGUUUUAUGCGGUCGAUGUGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU ..(((((...((((((((((((----(.....((((.....))))...)))))))))))))..(((.(..((..(((((...))))).))..).))).)))))... ( -30.30) >DroSec_CAF1 1034 102 + 1 AAGCGAAAUACAUUUUUCUACA----UAUCUUCCGUUUUAUGCGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU ..(((((...(((((((((...----((((..((((.....))))..)))).)))))))))..(((.(..((..(((((...))))).))..).))).)))))... ( -28.30) >DroSim_CAF1 8994 102 + 1 AAGCGAAAUACAUUUUUCUACA----UAUCUUCCGUUUUAUGCGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU ..(((((...(((((((((...----((((..((((.....))))..)))).)))))))))..(((.(..((..(((((...))))).))..).))).)))))... ( -28.30) >DroEre_CAF1 1020 102 + 1 AAGCGAGAUACAUUUUUCUACA----UUUGCUCCGUUUUGCGUGGUCGAGGGGGGAAGGUGGAUCUUGUGGUCUGGAGUAAUAUUUCUGUUGCUGGAAUUUGUAUU ..(((((((.(((((((((...----(((((..((.....))..).))))..))))))))).)))))))..(((..(((((((....))))))))))......... ( -27.40) >DroYak_CAF1 8724 106 + 1 AAACGAAAUACAUUUUUCUACAUACAUAUCUUCCGUUCUAUGUGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGUUGGUGGAAUUUGUAUU ......((((((...((((((..(((.(((((((..(((((.......))))))))))))(((((....))))).............)))..))))))..)))))) ( -25.00) >consensus AAGCGAAAUACAUUUUUCUACA____UAUCUUCCGUUUUAUGCGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU .((((((((((((((((((.......((((..((((.....))))..)))).)))))))))((((....))))........)))))).)))............... (-21.10 = -20.18 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:25 2006