Locus 5410

Sequence ID 2R_DroMel_CAF1
Location 17,462,840 – 17,462,944
Length 104
Max. P 0.797424
window8630

overview

Window 0

Location 17,462,840 – 17,462,944
Length 104
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 78.93
Mean single sequence MFE -31.70
Consensus MFE -20.71
Energy contribution -20.05
Covariance contribution -0.66
Combinations/Pair 1.21
Mean z-score -1.85
Structure conservation index 0.65
SVM decision value 0.61
SVM RNA-class probability 0.797424
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17462840 104 - 20766785
UUUAAAGCUCGCAUCACAUUCAAAUUAUGAUAAUGAUGGCGUGAGGCGAGGGUGUGUUUUUUGCAUAUGAGUUAAAGUGG-------------GGGUGUUUCGCAGAGUGGGUGUUU
......(((((((.(((((((..(((((....)))))(.(....).)..))))))).....)))............(((.-------------.(...)..))).))))........ ( -23.40)
>DroEre_CAF1 10454 101 - 1
UUUAAAGCCCGCAUCACACGCAAAUUAUGAUAAUGAUGGCGUGAGGCGAGGGUGUGUUU-CUGCAUAUGAGUCCAAGUGG---------------GGGUUCCACAGAGUGGGUGUAU
......((((((.((.(((((..(((((....))))).))))).(((....((((((..-..))))))..)))...((((---------------.....)))).)))))))).... ( -31.70)
>DroYak_CAF1 10995 116 - 1
UUUAAAGCCCGCAUCACACUUAAAUUAUGAUAAUGAUGGCGAGAGUCGUGAGUGUGUUU-UUGCAUAUGAGCCAAAGUGUGUGCGAGUGUGUGGAGUGUUCCACAGAUGGGGUGUAU
......(((((((.(((((((..(((((....)))))(((....)))((..((((((..-..))))))..))..))))))))))..((.(((((......))))).)).)))).... ( -40.00)
>consensus
UUUAAAGCCCGCAUCACACUCAAAUUAUGAUAAUGAUGGCGUGAGGCGAGGGUGUGUUU_UUGCAUAUGAGUCAAAGUGG_____________G_GUGUUCCACAGAGUGGGUGUAU
......(((((((.(((((((..(((((....)))))(.(....).)..))))))).....)))............(((......................))).....)))).... (-20.71 = -20.05 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:06 2006