| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,451,646 – 17,451,749 |
| Length | 103 |
| Max. P | 0.654806 |
| Location | 17,451,646 – 17,451,749 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -41.17 |
| Consensus MFE | -23.23 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17451646 103 - 20766785 AUGGGACUGCAGUGGCAUGGCCUGAUGGUAGUGAUGGUGGGCCUGCAGGGUUUGUGCAUGAUGCGGAUAAUUGAGGGUCAUGCCCAAUCCAUUAACAUGAUUA (((...(((((..(((.(.((((.((....)).).))).)))))))))((.(((.(((((((.(..........).))))))).))).)).....)))..... ( -31.00) >DroVir_CAF1 187966 100 - 1 AUGCGCUUGCAGUGGCAUCGCCUGAUGAUAGUGAUGAUGCGCCUGGAGCGUUUGGGCAUGAUGCGGAUAGUUUAGCGCCAUGCCCAAGCCACCAGCCCCG--- ..((((...((.((.((((....)))).)).)).....))))((((.(.(((((((((((.(((..........))).)))))))))))).)))).....--- ( -40.10) >DroGri_CAF1 183506 100 - 1 UUGCGAUUGCAGCGGCAUUGCCUGGUGGUAAUGAUGAUGCGCCUGCAACGUUUGCGCAUGAUGUGGAUAGUUGAGGGGCAUGCCCAUGCCACCCACACCG--- ..(((((.((....)))))))..(((((((.((...((((.(((.(((((((..((.....))..))).))))))).))))...))))))))).......--- ( -35.00) >DroEre_CAF1 165287 103 - 1 AUGGGACUGCAGCGGCAUGGCCUGAUGGUAGUGGUGGUGCGCCUGCAGGGUUUGGGCAUGAUGCGGAUAGUUGAGGGUCAUGCCCAAGCCGUUGACAUGGUUG (((...((((((.(((((.(((..........))).)))).)))))))((((((((((((((.(..........).)))))))))))))).....)))..... ( -48.70) >DroYak_CAF1 151629 103 - 1 AUGGGACUGCAGUGGCAUGGCCUGAUGGUAGUGGUGGUGCGCCUGCAGGGUUUGGGCAUGAUGCGGAUAGUUGAGGGUCAUGCCCAAGCCGUUGACAUGGUUA (((...((((((..((((.(((..........))).))))..))))))((((((((((((((.(..........).)))))))))))))).....)))..... ( -49.20) >DroMoj_CAF1 231895 100 - 1 GUGGCCCUGCAGCGGCAUGGCCUGAUGGUAGUGAUGAUGCGCCUGCAGCGUUUGCGCAUGAUGCGGAUAGUUGAGCGUCAUGCCGAGGCCACCGGGCCCC--- ..(((((.(((.((.(((.(((....))).))).)).)))((((((((...))))(((((((((..........)))))))))..))))....)))))..--- ( -43.00) >consensus AUGGGACUGCAGCGGCAUGGCCUGAUGGUAGUGAUGAUGCGCCUGCAGCGUUUGGGCAUGAUGCGGAUAGUUGAGGGUCAUGCCCAAGCCACCGACACCG___ ......((((((..((((.(((....))).......))))..)))))).(((((.(((((((.(..........).))))))).))))).............. (-23.23 = -23.70 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:01 2006