Locus 5402

Sequence ID 2R_DroMel_CAF1
Location 17,446,911 – 17,447,022
Length 111
Max. P 0.969020
window8617

overview

Window 7

Location 17,446,911 – 17,447,022
Length 111
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 63.58
Mean single sequence MFE -27.03
Consensus MFE -15.61
Energy contribution -15.85
Covariance contribution 0.24
Combinations/Pair 1.38
Mean z-score -1.54
Structure conservation index 0.58
SVM decision value 1.64
SVM RNA-class probability 0.969020
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17446911 111 - 20766785
GGCAGCAUUCGCU---ACACCUGUAUACAGGUGAAUGCUAUGAAGGGCAAAAAAGGUGGCGGGGAGGGACAACUUAAUUA---GUGCUUUUAAGUGAUUAUGCUUAAAUGAAAAACA
...((((((((((---(((((((....)))))...((((......))))......))))))).(((......))).....---)))))(((((((......)))))))......... ( -29.50)
>DroSim_CAF1 166491 112 - 1
GACAGCAUUCGCU---ACACCUGUAUACAGGUGAAAGCUAUGAAGGGCAA--AAGGUGGCGGGGACCUACAACUUAAUUAGCAGUGCUUUUAAGUGAUUCUGUUUAAAUGAAAAACA
(((((...(((((---.((((((....))))))...((((..(((.....--...((((.(....)))))..)))...))))..........)))))..)))))............. ( -30.10)
>DroAna_CAF1 146500 104 - 1
GGUAGCAACAGCUCGAAAGCUUGGCUACAGGUGAAAAA--UUAAAAUU----AAAAUGGCCAGAGGAGUCAUCUCAAUUAGCUUUCUCCUUAAAGGAU-AUGCUUGAUAGU------
...((((.......(((((((((((((....(((....--......))----)...))))))...(((....)))....)))))))(((.....))).-.)))).......------ ( -21.50)
>consensus
GGCAGCAUUCGCU___ACACCUGUAUACAGGUGAAAGCUAUGAAGGGCAA__AAGGUGGCGGGGAGAGACAACUUAAUUAGC_GUGCUUUUAAGUGAUUAUGCUUAAAUGAAAAACA
...((((.(((((....((((((....))))))...(((......))).........)))))((((((((.............)))))))).........))))............. (-15.61 = -15.85 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:53 2006