| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,852,213 – 2,852,309 |
| Length | 96 |
| Max. P | 0.782934 |
| Location | 2,852,213 – 2,852,309 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -15.80 |
| Energy contribution | -15.63 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2852213 96 + 20766785 CGGGCUCUUCGCCGAAACUGAAGGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAAUGAGGGAAUAGGUAAAAUAAAAGUCCGAUAUUCAAAAAAA (((((((((((((.(((((......)))....)).)))))))((..((......))..)).................))))))............. ( -19.90) >DroSec_CAF1 3868 92 + 1 CGGGCUCCUCGCCAAAGCUGAACGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAGGGAGGGAAUAGGGAAAAUAAAAGUCCGAUAUUCAAA---- ....((((((....(((((..(((((....)))...))..))))).....)))))).....(((((.(((.........)))..)))))...---- ( -25.20) >DroSim_CAF1 3745 92 + 1 CGGGCUCUUCGCCAAAGCUGAACGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAGGGAGGGAAUAGGGAAAAUAAAAGUCCAAAAUUCAAA---- ....((((((....(((((..(((((....)))...))..))))).....)))))).....((((..(((.........)))...))))...---- ( -20.90) >DroEre_CAF1 3821 85 + 1 CGGGCUCUUCACCAAAGCUGAAGGGAGUGAUCUUGGGUGGAGCUUG---AGAG---GGUG-GGAUAGGGAAAACAAAAGUCCGAACUUCAAA---- ((((((((...((((.(((......)))....))))..))))))))---.(((---(.(.-((((..(.....)....)))).).))))...---- ( -24.70) >DroYak_CAF1 3841 85 + 1 CGGGCUCCUCACCAAAGCUGAAGGGAGUGAUCUUGGGUGGAGCUUGUUAAGAU---GGCG-GGAUUGGGAAA---AAAGUUCGAAAUUCAAA---- ((((((((.(.((((.(((......)))....))))).)))))))).......---....-(((((..(((.---....)))..)))))...---- ( -22.00) >DroAna_CAF1 3841 81 + 1 CCGGCUCUUCGCCAAAGCUGAAGGGUGUGAUCUUGGGCGGAGCUUGG-----GUAGGGAUGGU-UGUGGUUAAAAAAAGGC-----UACAGA---- ((.(((((((((....)).))))))).....((..(((...)))..)-----)..)).....(-(((((((.......)))-----))))).---- ( -23.00) >consensus CGGGCUCUUCGCCAAAGCUGAAGGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAGGGAGGGAAUAGGGAAAAUAAAAGUCCGAAAUUCAAA____ ((((((((.(.((((.(((......)))....))))).))))))))...............((((..(((.........)))...))))....... (-15.80 = -15.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:15 2006